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Table 2 Gene content of Cuscuta reflexa and Cuscuta gronovii ptDNA compared to Nicotiana tabacum and Epifagus virginiana

From: Complete DNA sequences of the plastid genomes of two parasitic flowering plant species, Cuscuta reflexa and Cuscuta gronovii

photosynthetic and chlororespiratory genes

ribosomal RNA genes

transfer RNA genes

 

Nt

Cr

Cg

Ev

 

Nt

Cr

Cg

Ev

 

Nt

Cr

Cg

EV

atpA

+

+

+

Ψ

rrn16

+

+

+

+

trnA-ugc

+

+

Ψ

Ψ

atpB

+

+

+

Ψ

rrn23

+

+

+

+

trnC-gca

+

+

+

Ψ

atpE

+

+

+

-

rrn4.5

+

+

+

+

trnD-guc

+

+

+

+

atpF

+

+

+

-

rrn5

+

+

+

+

trnE-uuc

+

+

+

+

atpH

+

+

+

-

     

trnF-gaa

+

+

+

+

atpI

+

+

+

-

     

trnfM-cau

+

+

+

+

ndhA

+

-

-

-

     

trnG-gcc

+

+

+

-

ndhB

+

Ψ

-

Ψ

RNA polymerase and maturase genes

trnG-ucc

+

+

Ψ

-

ndhC

+

-

-

-

     

trnH-gug

+

+

+

+

ndhD

+

-

-

-

     

trnI-cau

+

+

+

+

ndhE

+

-

-

-

 

Nt

Cr

Cg

Ev

trnI-gau

+

+

Ψ

Ψ

ndhF

+

-

-

-

matK

+

+

-

+

trnK-uuu

+

-

-

-

ndhG

+

-

-

-

rpoA

+

+

-

Ψ

trnL-caa

+

+

+

+

ndhH

+

-

-

-

rpoB

+

+

-

-

trnL-uaa

+

+

+

-

ndhI

+

-

-

-

rpoC1

+

+

-

-

trnL-uag

+

+

+

+

ndhJ

+

-

-

-

rpoC2

+

+

-

-

trnM-cau

+

+

+

+

ndhK

+

-

-

-

     

trnN-guu

+

+

+

+

petA

+

+

+

-

     

trnP-ugg

+

+

+

+

petB

+

+

+

-

ribosomal protein and initiation factor genes

trnQ-uug

+

+

+

+

petD

+

+

+

-

     

trnR-acg

+

+

Ψ

+

petG

+

+

+

-

     

trnR-ucu

+

+

+

Ψ

petL

+

+

+

-

 

Nt

Cr

Cg

Ev

trnS-gcu

+

+

+

+

petN

+

+

+

-

infA

Ψ

-

-

+

trnS-gga

+

+

+

Ψ

psaA

+

+

+

-

rpl14

+

+

+

Ψ

trnS-uga

+

+

+

+

psaB

+

+

+

-

rpl16

+

+

+

+

trnT-ggu

+

+

+

-

psaC

+

+

+

-

rpl2

+

+

+

+

trnT-ugu

+

+

+

-

psaI

+

+

-

-

rpl20

+

+

+

+

trnV-gac

+

+

+

-

psaJ

+

+

+

-

rpl22

+

+

+

-

trnV-uac

+

+

-

-

psbA

+

+

+

Ψ

rpl23

+

Ψ

-

Ψ

trnW-cca

+

+

+

+

psbB

+

+

+

Ψ

rp132

+

+

-

-

trnY-gua

+

+

+

+

psbC

+

+

+

-

rpl33

+

+

+

+

     

psbD

+

+

+

-

rpl36

+

+

+

+

other protein genes

psbE

+

+

+

-

rps11

+

+

+

+

 

Nt

Cr

Cg

Ev

psbF

+

+

+

-

rps12

+

+

+

+

clpP

+

+

+

+

psbH

+

+

+

-

rps14

+

+

+

+

accD

+

+

+

+

psbI

+

+

+

-

rps15

+

+

+

-

ycf1

+

+

+

+

psbJ

+

+

+

-

rps16

+

Ψ

-

-

ycf2

+

+

+

+

psbK

+

+

+

-

rps18

+

+

+

+

ycf3

+

+

+

-

psbL

+

+

+

-

rps19

+

+

+

+

ycf4

+

+

+

-

psbM

+

+

+

-

rps2

+

+

+

+

ycf5

+

+

+

-

psbN

+

+

+

-

rps3

+

+

+

+

ycf9

+

+

+

-

psbT

+

+

+

-

rps4

+

+

+

+

ycf10

+

+

+

-

rbcL

+

+

+

Ψ

rps7

+

+

+

+

ycf15

+

Ψ

Ψ

Ψ

     

rps8

+

+

+

+

orf350

+

-

+

+

  1. +: gene present; -: gene deleted; pseudogenes are indicated by Ψ ; Nt: Nicotiana tabacum; Cr: Cuscuta reflexa; Cg: Cuscuta gronovii; Ev: Epifagus virginiana