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Table 1 Summary of sequencing results

From: Natural variation in CBF gene sequence, gene expression and freezing tolerance in the Versailles core collection of Arabidopsis thaliana

  

CBF1

CFB2

CFB3

 
 

no. accessions sequenced

48

48

48

 

promoter

bp

1210

1430

1314

CBF1: 4 deletions: 8–50 bp

 

nb SNP

106

65

81

3 insertions: 9–20 bp, 1 large insertion

 

SNP/100 bp

8,8

4,5

6,2

CBF2: deletions 50 bp, 1.5 kb

     

2 insertions, 1 microsatellite

 

no. accessions sequenced

48

48

46

CBF3: insertion 9 bp

coding sequence

bp

642

652

651

CBF1: deletion 10 AA

 

nb AA

213

216

216

CBF3: 1 codon stop

 

nb SNP

39

20

27

 
 

SNP/100 bp

5,1

3,1

4,1

 
 

SNP ns

12

8

14

 
  1. "SNP ns" refers to the number of non-synonymous amino acid changes