Skip to main content

Table 2 Annotations of unigenes based on different public databases

From: Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines

Database

No. of matched unigenes

Percentage of total unigenes (%)

TIGR OGI(ver17)

7126

94.3

TIGR PseudoMolecule(ver5)

6151

81.4

NCBI UNIGENE(ver62)

6714

88.8

NCBI nr protein database

5831

77.2

93-11 BGI_Scan

5854

77.5

Uniprot protein database

3628

48.0

TIGR to GO

4565

60.4

KEGG Automatic Annotation Server

945

12.5

  1. Alignments were performed by using blast (e-value = 1.00e-05), and 7,250 (95.9%) unigenes were annotated.
Back to article page

BMC Plant Biology

ISSN: 1471-2229

Contact us