Table 5 Comparison of tomato and apple fruit development genes

SGN-U313081

1-1-1.4.4.1

CN949202

Tubulin

4.00E-114

SGN-U334957

1-1-1.4.2.16

EG631180

dimethyllallyl pyrophosphate isomerase

2.00E-70

SGN-U313439

1-1-1.2.10.21

CN929316

Catalase isozyme

5.00E-67

SGN-U312411

1-1-3.1.20.8

CN929316

Catalase isozyme

1.00E-39

SGN-U314745

1-1-6.2.2.12

EB129157

Histone H2B family

5.00E-64

SGN-U315396

1-1-1.1.2.14

CN897140

Histone H2B family

1.00E-52

SGN-U320099

1-1-2.2.8.13

EB134184

homeodomain leucine zipper protein

5.00E-50

SGN-U312336

1-1-3.2.14.10

CN900880

Chlorophyll a/b binding protein CP24

8.00E-45

SGN-U316933

1-1-2.2.10.18

CN938965

SLT1 protein

1.00E-42

SGN-U312305

1-1-4.1.9.2

EB115858

Tubulin

5.00E-42

SGN-U312306

1-1-1.1.17.12

CN898685

Tubulin

3.00E-37

SGN-U312504

1-1-4.2.1.21

CN929029

Glycolate oxidase

5.00E-33

SGN-U312724

1-1-3.2.1.14

CN929029

Glycolate oxidase

9.00E-22

SGN-U313531

1-1-5.3.20.16

EB140736

multi-copper oxidase type I family protein

5.00E-33

SGN-U314489

1-1-5.4.1.13

EB128513

β-glucosidase

5.00E-30

SGN-U313179

1-1-3.3.12.5

EB149714

Photosystem I reaction center subunit N

3.00E-29

SGN-U313648

1-1-1.1.2.9

EB139544

multi-copper oxidase type I family protein

2.00E-26

SGN-U314548

1-1-1.1.14.13

EB128647

Peptidyl-prolyl cis-trans isomerase A

6.00E-25

SGN-U312538

1-1-1.3.12.16

EB130656

60 kDa chaperonin 2 (groEL protein 1)

8.00E-23

SGN-U312683

1-1-2.1.6.18

CN900931

Calreticulin precursor

9.00E-19

SGN-U319738

1-1-1.2.11.21

CN865336

zinc (C3HC4-type RING finger) family

3.00E-18

SGN-U314473

1-1-8.2.16.2

EB176490

MADS-box protein (AGL3) RIN

3.00E-17

SGN-U317999

1-1-4.3.10.21

CN945062

PGR5 related

8.00E-17

SGN-U318625

1-1-2.3.5.9

EB114733

kinase-activating protein

3.00E-16

SGN-U312874

1-1-1.3.11.19

CN909851

HMG protein

7.00E-16

SGN-U313470

1-1-2.1.19.16

CN940020

Hypothetical protein

2.00E-13

SGN-U333609

1-1-3.1.10.16

EB140812

expansin (EXP15)

7.00E-12

SGN-U313166

1-1-6.1.9.20

EB131083

Hypothetical protein

2.00E-11

SGN-U314384

1-1-5.4.4.11

EB132156

Lipid transfer protein (LTP1)

1.00E-10

SGN-U314386

1-1-5.1.15.12

EB132156

Lipid transfer protein (LTP1)

3.00E-07

SGN-U313194

1-1-2.3.4.21

EB131105

Photosystem I reaction center subunit psaK

3.00E-10

SGN-U313424

1-1-1.3.1.15

CN948056

seed storage/lipid transfer protein family

4.00E-10

SGN-U314489

1-1-5.4.1.13

EB141224

β-glucosidase, protein

1.00E-09

SGN-U312690

1-1-2.1.2.8

EB141004

Plastocyanin

2.00E-09

SGN-U336943

1-1-8.2.6.16

CN911937

hypothetical protein

7.00E-09

SGN-U331028

1-1-5.3.5.7

CN913037

Hypothetical protein

2.00E-08

SGN-U317844

1-1-8.4.6.17

EB140002

subtilase family protein

3.00E-07

SGN-U312690

1-1-2.1.2.8

EB127862

Glycolate oxidase^e

4.00E-07

SGN-U313570

1-1-1.1.12.3

CN909757

hypothetical protein^f

4.00E-07

SGN-U316057

1-1-6.4.13.2

CN882413

Aspartyl protease family protein

8.00E-07

SGN-U334601

1-1-8.4.10.14

CN887130

Aldehyde dehydrogenase 2B4

2.00E-06

SGN-U319033

1-1-3.2.20.7

EB133081

bZIP transcription factor

2.00E-06

SGN-U314713

1-1-1.2.1.20

CN918915

aldo/keto reductase family^g

2.00E-06

SGN-U314261

1-1-7.4.10.14

EB148186

photosystem I subunit III precursor

6.00E-06

Mid development cluster

SGN-U312527

1-1-4.2.20.9

EB130137

S-adenosylmethionine synthetase

8.00E-109

SGN-U312579

1-1-4.4.6.16

EB130137

S-adenosylmethionine synthetase

4.00E-70

SGN-U313529

1-1-6.3.1.18

EB130137

S-adenosylmethionine synthetase

6.00E-75

SGN-U313179

1-1-3.3.12.5

EB148119

Photosystem I reaction centre subunit N

4.00E-47

SGN-U312700

1-1-2.4.10.20

EB110724

Aquaporin PIP1.1

9.00E-46

SGN-U313179

1-1-3.3.12.5

EB138262

Photosystem I reaction center subunit)

2.00E-42

SGN-U313283

1-1-2.1.14.13

EB109090

Peptidyl-prolyl cis-trans isomerase

1.00E-37

SGN-U312814

1-1-3.3.9.20

CN943669

Plasma membrane intrinsic protein

5.00E-35

SGN-U316986

1-1-3.1.2.11

EG631337

class II heat shock protein

6.00E-33

SGN-U313962

1-1-5.2.4.10

EB143575

Hypersensitive induced response protein

7.00E-28

SGN-U312403

1-1-2.2.19.9

EE663740

Heat shock 70 kDa protein

1.00E-18

SGN-U313542

1-1-3.4.1.6

CN882970

plasma membrane protein

8.00E-18

SGN-U312953

1-1-3.3.3.13

EB129432

α-expansin precursor

4.00E-17

SGN-U333609

1-1-3.1.10.16

EB129432

α-expansin precursor

2.00E-06

SGN-U314790

1-1-6.3.18.20

CN913939

quinone-oxidoreductase protein

4.00E-17

SGN-U314793

1-1-2.3.17.10

CN913939

quinone-oxidoreductase protein

2.00E-10

SGN-U312450

1-1-7.3.19.9

EE663684

17.6 kDa class I heat shock protein

2.00E-12

SGN-U315846

1-1-3.2.11.11

CN866618

CBL-interacting protein kinase

2.00E-11

SGN-U314303

1-1-4.4.8.10

EB138124

Fatty aldehyde dehydrogenase

2.00E-10

SGN-U318440

1-1-8.1.15.21

CN875978

Hypothetical protein

4.00E-08

Ripening cluster

SGN-U312527

1-1-4.2.20.9

EB137890

S-adenosylmethionine synthetase 1

6.00E-88

SGN-U312579

1-1-4.4.6.16

EB137890

S-adenosylmethionine synthetase 1

5.00E-42

SGN-U313529

1-1-6.3.1.18

EB137890

S-adenosylmethionine synthetase 1

3.00E-86

SGN-U312306

1-1-1.1.17.12

CN943168

Tubulin

5.00E-54

SGN-U314314

1-1-5.2.14.12

CN907169

Hypothetical protein

4.00E-44

SGN-U315828

1-1-3.2.1.16

CN940740

Cytochrome C oxidase subunit protein

5.00E-41

SGN-U334905

1-1-4.1.6.7

EB130234

β-carotene hydroxylase

2.00E-39

SGN-U312904

1-1-1.3.13.18

EB150480

haloacid dehalogenase hydrolase family

6.00E-38

SGN-U314358

1-1-4.3.1.2

CN915191

Alcohol dehydrogenase

5.00E-33

SGN-U319942

1-1-4.4.2.20

CN874208

Membrane-anchored ubiquitin-fold protein

2.00E-24

SGN-U316057

1-1-6.4.13.2

CN879999

aspartyl protease family protein

3.00E-22

SGN-U317374

1-1-8.2.2.7

CN946592

Hypothetical protein

3.00E-19

SGN-U336133

1-1-1.4.10.1

EG631183

α-amylase

5.00E-19

SGN-U318901

1-1-1.3.6.2

CN876487

Hypothetical protein

2.00E-17

SGN-U316698

1-1-3.2.1.19

CN868148

Seed maturation protein

5.00E-17

SGN-U316057

1-1-6.4.13.2

CN894718

aspartyl protease family protein

9.00E-16

SGN-U313923

1-1-4.2.19.5

CN883582

SNF1 protein kinase regulatory gamma

9.00E-16

SGN-U314101

1-1-2.4.13.5

CN941714

Chaperone clpB

7.00E-15

SGN-U317462

1-1-2.4.16.8

CN884487

Dual specificity protein phosphatase 6

5.00E-13

SGN-U313514

1-1-4.2.3.20

EB152301

14-3-3 protein GF14 upsilon (GRF5)

2.00E-12

SGN-U313747

1-1-2.3.3.5

EB128426

vacuolar processing enzyme-1b

3.00E-12

SGN-U316038

1-1-3.1.9.11

EE663883

Expressed protein

9.00E-12

SGN-U314449

1-1-8.1.4.18

CN902741

hypothetical or unknown protein

2.00E-11

SGN-U314453

1-1-2.4.16.1

CN902741

hypothetical or unknown protein

4.00E-11

SGN-U313315

1-1-3.1.9.21

EG631213

Putative chloroplast-targeted β-amylase

1.00E-09

SGN-U328474

1-1-8.4.1.16

CN911230

NHL repeat-containing protein

2.00E-09

SGN-U314887

1-1-3.3.3.14

EB144737

Phytoene synthase

3.00E-09

SGN-U313474

1-1-3.1.12.20

CN898201

short chain dehydrogenase/reductase family

3.00E-08

SGN-U322411

1-1-6.1.18.17

EB137522

Homocysteine S methyltransferase 1

2.00E-07

SGN-U315858

1-1-5.3.11.3

CN895375

Universal stress protein

2.00E-07

SGN-U315671

1-1-1.2.16.10

CN929435

Ethylene-responsive DEAD box RNA helicase

3.00E-07

SGN-U312714

1-1-2.3.9.4

EG631274

Cytochrome P450 85A1 (C6-oxidase)

2.00E-07

SGN-U312715

1-1-1.1.15.15

EG631274

Cytochrome P450 85A1 (C6-oxidase)

3.00E-07

SGN-U313547

1-1-2.4.5.5

CN917878

Plasma membrane ATPase 1 (Proton pump 1)

4.00E-07

SGN-U312870

1-1-4.2.15.8

EE663893

Xyloglucan:xyloglucosyl transferase

6.00E-07

SGN-U316695

1-1-1.2.8.9

EB111007

Mitogen-activated protein kinase 3

7.00E-07

SGN-U320099

1-1-2.2.8.13

EB116421

Homeobox leucine zipper protein ATHB-4

2.00E-06

SGN-U312516

1-1-1.3.7.19

EG631323

N-benzoyltransferase protein

4.00E-06

SGN-U312884

1-1-8.3.6.6

CN862135

Hypothetical protein

6.00E-06