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Table 6 Early apple fruit gene identified in 'Fuji' which change during 'Royal Gala' fruit development

From: Global gene expression analysis of apple fruit development from the floral bud to ripe fruit

EFD genes from Lee et al. (2007)a expect valueb Genbank acc for array oligo Annotation
EFD cluster
DW248931 1.00E-155 CN900880 chlorophyll A-B binding protein (LHCI type I (CAB))
DW248987 0 EB127862 Glycolate oxidase
DW248917 1.00E-177 EB127279 lipid protein
DW248920 0 EB148186 Photosystem I reaction center subunit III
DW248842 0 CN929029 Glycolate oxidase
DW248924 0 EB115972 Ascorbate peroxidase
DW248835 0 EB140491 aquaporin TIP1.3
DW248922 0 EB149714 Photosystem I reaction center subunit N
DW248839 0 CN926591 NADH dehydrogenase
DW248976 0 EB112578 Trans-cinnamate 4-monooxygenase (Cytochrome P450 73)
DW248868 0 CN915536 rapid alkalinization factor
DW248881 1.00E-143 CN861574 phytol kinase 2
DW248942 0 CN861788 Photosystem I reaction center subunit V
MD cluster
DW248803 1.00E-87 CN913162 CP12 protein
DW248895 5.00E-95 EB148680 Oxygen-evolving enhancer protein
DW248912 5.00E-163 CN870279 16.9 kDa class I heat shock protein
DW248912 5.00E-163 EG631337 class I heat shock protein
Not selected in Royal Gala fruit development
DW248927 0 EB127218 Polyphenol oxidase
DW248967 0 EB127720 Ferredoxin-thioredoxin reductase
DW248839 0 CN894409 NADH dehydrogenase
DW248924 0 EB138975 Ascorbate peroxidase
DW248940 0 CN899704 oligouridylate binding protein
DW248833 0 EB128528 Hypothetical protein
DW248979 0 EB129884 α-expansin
DW248918 0 CN944949 Photosystem I reaction center subunit II
DW248941 0 CN884411 chlorophyll A-B binding protein
DW248844 0 EB148603 RuBisCO activase
DW248914 0 EB148603 RuBisCO activase
DW248854 1.00E-129 EB148750 Oxygen-evolving enhancer protein 2
DW248983 0 EB131218 fatty acid elongase 3-ketoacyl-CoA synthase 1
DW248994 0 CN912337 Glutamate-1-semialdehyde 2,1-aminomutase
  1. Genes identified by [25] as up-regulated during EFD were used to identify apple genes present on the array.
  2. a Genbank accession for those genes identified in Lee at al as up regulated in early fruit development with homologues present on our array.
  3. b expect value for the BLAST comparison between the Fuji gene and the apple gene which contains the array oligo.