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Table 1 Cis-element candidate motifs from Aux/IAA genes and suggested to be auxin-induction related according to ATCIS.

From: Development of a novel data mining tool to find cis-elements in rice gene promoter regions

Motif

Hit TU in target group*1

Hit TU in whole*2

Lift

ATCIS Description

ACACAC

10

6056

1.353

PRHA BS in PAL1*3

ATACACA

5

2124

1.929

PRHA BS in PAL1

ATACACAC

3

739

3.326

PRHA BS in PAL1

TACACAC

4

1786

1.835

PRHA BS in PAL1

CATGTCTC

1

303

2.704

-

GTGTCTC

1

722

1.135

-

TGTCTCCG

1

178

4.603

-

TGTCTCTG

2

263

6.231

-

  1. *1 The number of TU possessing the designated motif within 28 TUs of the target gene list.
  2. *2 The number of TU possessing the designated motif within 22943 TUs stored in KOME database.
  3. *3 PRHA = Developmental and auxin-induced expression of the Arabidopsis prha homeobox gene.