Table 2 Predicted targets for the newly identified miRNAs in rice.
From: Identification of novel and candidate miRNAs in rice by high throughput sequencing
miRNA | Target gene (number of mismatches between the miRNA and the mRNA is indicated in parentheses) | Putative function of the target gene |
|---|---|---|
Osa-miR1436 | Os03g26190(3); Os06g23090(3); Os08g36050(1) | hypothetical proteins |
Osa-miR1432 | Os03g59770(1); Os03g59790(1); Os03g59870(1) | EF hand proteins |
Osa-miR444e | Os04g38780(0); Os02g49840(2) | MADS-box factor 27; MADS-box factor 57 |
Osa-miR444c.1 | Os02g49840(0); Os04g38780(2); Os08g06510(2) | MADS-box factor 57; MADS-box factor 27; zinc finger, C3HC4 type family protein |
Osa-miR444f | Os04g38780(1); Os02g49840(1); Os08g06510(3) | MADS-box factor 27; MADS-box factor 57; zinc finger, C3HC4 type family protein |
Osa-miR444c.2 | Os04g38780(0); Os02g49840(2) | MADS-box factor 27; MADS-box factor 57 |
Osa-miR444d | Os02g49840(0); Os10g27170(3) | MADS-box factor 57; calmodulin binding protein |
Osa-miR1427 | Os04g32560(3); Os06g14810(3) | clpA homolog CD4B; 3-ketoacyl-CoA synthase |
Osa-miR1425 | Os10g35640(2); Os08g01640(3); Os08g01650(3); Os10g35230(3); Os10g35240(3); Os10g35436(3); Os08g01870(3); Os10g35790(3) | PPR proteins |