From: Identification of novel and candidate miRNAs in rice by high throughput sequencing
miRNA | miRNA sequence | Frequency in the untreated library | Frequency in the drought-stressed library | Frequency in the salt-stressed library |
---|---|---|---|---|
Osa-miR156a-j | UGACAGAAGAGAGUGAGCAC | 565 | 302 | 436 |
Osa-miR156k | UGACAGAAGAGAGAGAGCACA | 9 | 0 | 9 |
Osa-miR156l | CGACAGAAGAGAGUGAGCAUA | 520 | 271 | 390 |
Osa-miR159a, b | UUUGGAUUGAAGGGAGCUCUG | 92 | 16 | 45 |
Osa-miR159c | AUUGGAUUGAAGGGAGCUCCA | 89 | 15 | 41 |
Osa-miR159d | AUUGGAUUGAAGGGAGCUCCG | 79 | 13 | 37 |
Osa-miR159f | CUUGGAUUGAAGGGAGCUCUA | 90 | 16 | 41 |
Osa-miR159e | AUUGGAUUGAAGGGAGCUCCU | 0 | 0 | 0 |
Osa-miR160a-d | UGCCUGGCUCCCUGUAUGCCA | 71 | 43 | 71 |
Osa-miR160e | UGCCUGGCUCCCUGUAUGCCG | 66 | 41 | 68 |
Osa-miR160f | UGCCUGGCUCCCUGAAUGCCA | 30 | 15 | 21 |
Osa-miR162a | UCGAUAAACCUCUGCAUCCAG | 6 | 0 | 1 |
Osa-miR162b | UCGAUAAGCCUCUGCAUCCAG | 3 | 0 | 1 |
Osa-miR164a, b, f | UGGAGAAGCAGGGCACGUGCA | 55 | 32 | 38 |
Osa-miR164c | UGGAGAAGCAGGGUACGUGCA | 12 | 13 | 20 |
Osa-miR164d | UGGAGAAGCAGGGCACGUGCU | 45 | 22 | 32 |
Osa-miR164e | UGGAGAAGCAGGGCACGUGAG | 38 | 22 | 34 |
Osa-miR166a-d, f, n | UCGGACCAGGCUUCAUUCCCC | 23 | 12 | 27 |
Osa-miR166e | UCGAACCAGGCUUCAUUCCCC | 14 | 5 | 17 |
Osa-miR166g, h | UCGGACCAGGCUUCAUUCCUC | 24 | 12 | 26 |
Osa-miR166i, j | UCGGAUCAGGCUUCAUUCCUC | 1 | 0 | 0 |
Osa-miR166k, l | UCGGACCAGGCUUCAAUCCCU | 5 | 6 | 4 |
Osa-miR166m | UCGGACCAGGCUUCAUUCCCU | 24 | 13 | 27 |
Osa-miR167a-c | UGAAGCUGCCAGCAUGAUCUA | 106 | 34 | 36 |
Osa-miR167d-j | UGAAGCUGCCAGCAUGAUCUG | 111 | 34 | 36 |
Osa-miR168a | UCGCUUGGUGCAGAUCGGGAC | 1007 | 533 | 388 |
Osa-miR169a | CAGCCAAGGAUGACUUGCCGA | 916 | 230 | 283 |
Osa-miR169b, c | CAGCCAAGGAUGACUUGCCGG | 916 | 230 | 285 |
Osa-miR169d | UAGCCAAGGAUGAAUUGCCGG | 8 | 1 | 0 |
Osa-miR169e | UAGCCAAGGAUGACUUGCCGG | 925 | 237 | 289 |
Osa-miR169f, g | UAGCCAAGGAUGACUUGCCUA | 939 | 238 | 291 |
Osa-miR169h-m | UAGCCAAGGAUGACUUGCCUG | 943 | 242 | 294 |
Osa-miR169n, o | UAGCCAAGAAUGACUUGCCUA | 271 | 67 | 76 |
Osa-miR169p | UAGCCAAGGACAAACUUGCCGG | 2 | 1 | 1 |
Osa-miR169q | UAGCCAAGGAGACUGCCCAUG | 28 | 11 | 3 |
Osa-miR171a | UGAUUGAGCCGCGCCAAUAUC | 16 | 4 | 7 |
Osa-miR171b-f | UGAUUGAGCCGUGCCAAUAUC | 82 | 28 | 52 |
Osa-miR171g | GAGGUGAGCCGAGCCAAUAUC | 1 | 1 | 0 |
Osa-miR171h | GUGAGCCGAACCAAUAUCACU | 0 | 2 | 0 |
Osa-miR171i | GGAUUGAGCCGCGUCAAUAUC | 8 | 0 | 2 |
Osa-miR172a, d | AGAAUCUUGAUGAUGCUGCAU | 402 | 100 | 192 |
Osa-miR172b | GGAAUCUUGAUGAUGCUGCAU | 377 | 94 | 179 |
Osa-miR172c | UGAAUCUUGAUGAUGCUGCAC | 377 | 94 | 177 |
Osa-miR319a, b | UUGGACUGAAGGGUGCUCCC | 23 | 3 | 5 |
Osa-miR390 | AAGCUCAGGAGGGAUAGCGCC | 55 | 30 | 33 |
Osa-miR393a-b | UCCAAAGGGAUCGCAUUGAUCU | 123 | 23 | 47 |
Osa-miR394 | UUGGCAUUCUGUCCACCUCC | 1 | 1 | 2 |
Osa-miR395a-t | GUGAAGUGCUUGGGGGAACUC | 1 | 0 | 2 |
Osa-miR395o | AUGAAGUGUUUGGAGGAACUC | 1 | 0 | 0 |
Osa-miR396a-c | UUCCACAGCUUUCUUGAACUG | 8 | 1 | 4 |
Osa-miR396d, e | UCCACAGGCUUUCUUGAACUG | 20 | 5 | 8 |
Osa-miR397a, b | UUAUUGAGUGCAGCGUUGAUG | 10 | 5 | 11 |
Osa-miR398a, b | UGUGUUCUCAGGUCGCCCCUG | 21 | 5 | 3 |
Osa-miR399e-g | UGCCAAAGGAGAUUUGCCCAG | 1 | 0 | 0 |
Osa-miR408 | CUGCACUGCCUCUUCCCUGGC | 0 | 0 | 1 |
Osa-miR435 | UUAUCCGGUAUUGGAGUUGA | 4 | 0 | 1 |
Osa-miR437 | AAAGUUAGAGAAGUUUGACUU | 4 | 2 | 0 |
Osa-miR439a-j | UGUCGAACCGCGGUUGUUCGA | 4 | 1 | 0 |
Osa-miR440 | AGUGUCUCCUGAUGAUCGGGACAA | 4 | 1 | 1 |
Osa-miR441a-c | UACCAUCAAUAUAAAUGUGGGAAA | 2 | 2 | 0 |
Osa-miR442 | UGACGUGUAAAUUGCGAGACGAAU | 6 | 0 | 0 |
Osa-miR444 | UUGCUGCCUCAAGCUUGCUGC | 3 | 0 | 1 |
Osa-miR445a-i | UAAAUUAGUGUAUAAACAUCCGAU | 4 | 0 | 0 |
Osa-miR446 | CAUCAAUAUGAAUAUGGGAAAUGG | 2 | 2 | 3 |
Osa-miR528 | UGGAAGGGGCAUGCAGAGGAG | 0 | 0 | 1 |
Osa-miR529 | CUGUACCCUCUCUCUUCUUC | 1 | 1 | 1 |
Osa-miR530 | AGGUGCAGAGGCAGAUGCAAC | 22 | 6 | 1 |
Osa-miR531 | CUCGCCGGGGCUGCGUGCCGCCAU | 3 | 1 | 4 |
Osa-miR535 | UGACAACGAGAGAGAGCACGC | 10 | 7 | 36 |
Osa-miR806a-h | AUGUGCUAAAAAGUCAACGGUG | 19 | 3 | 9 |
Osa-miR808 | AUGAAUGUGGGAAAUGUAAGAA | 3 | 1 | 0 |
Osa-miR809a-h | UGAAUGUGAGAAAUGUUAGAAU | 7 | 4 | 1 |
Osa-miR811a-c | ACCGUUAGAUCGAGAAAUGGACGU | 4 | 1 | 0 |
Osa-miR812a-e | GACGGACGGUUAAACGUUGGAC | 3 | 1 | 2 |
Osa-miR813 | GGGUUAUGGAAUGGGUUUUACC | 3 | 3 | 1 |
Osa-miR814a-c | CACUUCAUAGUACAACGAAUCU | 0 | 2 | 1 |
Osa-miR815a-c | AAGGGGAUUGAGGAGAUUGGG | 2 | 2 | 0 |
Osa-miR816 | GUGACAUAUUUUACUACAAC | 0 | 0 | 0 |
Osa-miR817 | UCCAACUUGAGGCCCGAUUGA | 0 | 0 | 0 |
Osa-miR818a-e | AAUCCCUUAUAUUAUGGGACGG | 21 | 5 | 3 |
Osa-miR819a-k | UCAGGUUAUAAGACUUUCUAGC | 1 | 2 | 0 |
Osa-miR820a-c | CGGCCUCGUGGAUGGACCAGG | 55 | 17 | 26 |