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Table 2 Azucena and IR64 RSR sequences mapped at the same location. a: cDNA-AFLP fragment GenBank accession.

From: Rice Yellow Mottle Virus stress responsive genes from susceptible and tolerant rice genotypes

IDa

Cultivar

Variation of gene expressionb

Descriptionc

Chromosome

Start position (bp)

gb|DQ883945

Azucena

(7dpi)+

sphingosine-1-phosphate lyase

1

37379

gb|DQ883961

Azucena

(2dpi)+

sphingosine-1-phosphate lyase

1

37386

gb|DQ884107

IR64

(BI)-(2,5,7dpi)-

sphingosine-1-phosphate lyase

1

37386

gb|DQ884097

IR64

(BI)-(2dpi)+

ATP-binding cassette

1

661520

gb|DQ883934

Azucena

(5,7dpi)-

ABC transporter

1

661520

gb|DQ883962

Azucena

(BI)+(3dpi)+

ABC transporter

1

7762693

gb|DQ884118

IR64

(2dpi)+

ABC transporter

1

7762700

gb|DQ883963

Azucena

(5,7dpi)+

ABC transporter

1

7762703

gb|DQ884067

IR64

(5,7dpi)-

OsTATC

1

25926035

gb|DQ883887

Azucena

(5,7dpi)-

OsTATC

1

25926035

gb|DQ883980

Azucena

(BI)+

transcription factor EREBP1

2

2730720

gb|DQ883981

Azucena

(BI)+

transcription factor EREBP1

2

2730722

gb|DQ883986

Azucena

(3dpi)+

transcription factor EREBP1

2

2730722

gb|DQ884016

Azucena

(5,7dpi)-

potassium transporter HAK1p

2

5509064

gb|DQ884017

Azucena

(7dpi)+

potassium transporter HAK1p

2

5509070

gb|DQ883933

Azucena

(5,7dpi)-

peroxisomal targeting signal 2 receptor

2

8205239

gb|DQ883935

Azucena

(5dpi)+

peroxisomal targeting signal 2 receptor

2

8205240

gb|DQ883937

Azucena

(5dpi)+

-

2

22063567

gb|DQ884129

IR64

(5dpi)+

-

2

22063567

gb|DQ884022

IR64

(BI)-(2,5)-

senescence-associated protein

2

28710373

gb|DQ884021

IR64

(5,7dpi)-

senescence-associated protein

2

28710376

gb|DQ884026

IR64

(7dpi)+

-

3

8112599

gb|DQ884027

IR64

(5dpi)+

-

3

8112604

gb|DQ883936

Azucena

(3dpi)+

-

3

19981332

gb|DQ884126

IR64

(5,7dpi)+

-

3

19981332

gb|DQ883998

Azucena

(BI)+(3,5,7dpi)+

splicing factor

3

28989563

gb|DQ883999

Azucena

(BI)-(3,5,7dpi)-

splicing factor

3

28989563

gb|DQ883950

Azucena

(3,5,7dpi)+

inositol phosphate kinase

3

29491859

gb|DQ883952

Azucena

(BI)+

inositol phosphate kinase

3

29491859

gb|DQ884093

IR64

(5,7dpi)-

inositol phosphate kinase

3

29492176

gb|DQ884005

Azucena

(BI)+(3,5,7dpi)+

receptor kinase

3

34628274

gb|DQ884006

Azucena

(5dpi)+

receptor kinase

3

34628277

gb|DQ884124

IR64

(2,5,7dpi)+

receptor kinase

3

34628284

gb|DQ884032

IR64

(5,7dpi)-

-

4

4985354

gb|DQ884031

IR64

(5,7dpi)-

-

4

4985360

gb|DQ883901

Azucena

(3,5,7dpi)-

large ribosomal protein 23

4

9131675

gb|DQ883900

Azucena

(BI)-(3dpi)-

large ribosomal protein 23

4

9131683

gb|DQ883941

Azucena

(5dpi)+

-

4

25607867

gb|DQ883946

Azucena

(5dpi)+

-

4

25607880

gb|DQ884135

IR64

(BI)+(2,5dpi)+

photosystem II stability/assembly factor

6

156408

gb|DQ884136

IR64

(BI)+(2dpi)+

photosystem II stability/assembly factor

6

156408

gb|DQ883985

Azucena

(BI)-

-

6

294284

gb|DQ883988

Azucena

(3,5,7dpi)-

-

6

294284

gb|DQ884103

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

6

3064929

gb|DQ884104

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

6

3064929

gb|DQ883896

Azucena

(7dpi)+

-

7

8998816

gb|DQ883909

Azucena

(5,7dpi)+

-

7

8998816

gb|DQ884103

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

7

12659627

gb|DQ884104

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

7

12659627

gb|DQ883901

Azucena

(3,5,7dpi)-

large ribosomal protein 23

7

14240632

gb|DQ883900

Azucena

(BI)-(3dpi)-

large ribosomal protein 23

7

14240640

gb|DQ884133

IR64

(5,7dpi)+

-

8

501007

gb|DQ884134

IR64

(7dpi)+

-

8

501007

gb|DQ883901

Azucena

(3,5,7dpi)-

large ribosomal protein 23

8

9254046

gb|DQ883900

Azucena

(BI)-(3dpi)-

large ribosomal protein 23

8

9254054

gb|DQ884076

IR64

(5,7dpi)+

OSH45

8

11757217

gb|DQ884077

IR64

(5dpi)-

OSH45

8

11757217

gb|DQ884022

IR64

(BI)-(2,5dpi)-

senescence-associated protein

9

7658

gb|DQ884021

IR64

(5,7dpi)-

senescence-associated protein

9

7661

gb|DQ883901

Azucena

(3,5,7dpi)-

large ribosomal protein 23

9

14504325

gb|DQ883900

Azucena

(BI)-(3dpi)-

large ribosomal protein 23

9

14504333

gb|DQ884103

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

10

10583266

gb|DQ884104

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

10

10583266

gb|DQ883842

Azucena

(5,7dpi)+

-

11

1188582

gb|DQ884055

Azucena

(5,7dpi)+

-

11

1188589

gb|DQ884103

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

12

21873723

gb|DQ884104

IR64

(BI)+(2,5,7dpi)+

NADH dehydrogenase subunit 4

12

21873723

gb|DQ883842

Azucena

(5,7dpi)+

-

12

26262316

gb|DQ884055

Azucena

(5,7dpi)+

-

12

26262323

  1. b: pattern of deregulation, inside brackets BI for buffer inoculated control or n dpi (n days post inoculation), + for up regulation, - for down regulation. c: putative function as found after blasting against NR database.