From: Unexpected complexity of the Aquaporin gene family in the moss Physcomitrella patens
New namea | Borstlapb | PpDBc | ESTd | ProteinIDe | Commentsf |
---|---|---|---|---|---|
PIP1;1 | - | PIP1 | Y | 62169 | |
PIP1;2 | PIP1 | PIP | Y | 166091 | |
PIP1;3 | PIP1 | PIP | Y | 171662 | |
PIP2;1 | - | PIP | Y | 202226 | |
PIP2;2 | PIP2 | PIP | Y | 209703 | |
PIP2;3 | PIP2 | PIP | Y | 196472 | |
PIP2;4 | - | PIP | ? | 135286 | Identical to 83986g |
- | - | PIP | ? | 83986 | Identical to 135286g |
PIP3;1 | - | PIP2 | ? | 68172 | |
PseudoPIP#1 | - | -h | ? | 113412 | Pseudogene, PIP-like, based on ProteinID = 113412 but encoding 123 amino acids in two exons |
PseudoPIP#2 | - | - | ? | - | Pseudogene, PIP-like, encoding 83 amino acids in one exon |
TIP6;1 | - | TIP | Y | 73809 | |
TIP6;2 | TIP | TIP | Y | 191107 | |
TIP6;3 | TIP | -h | Y | 214518 | |
TIP6;4 | TIP | TIP | Y | 219971 | |
NIP3;1 | - | NIP5 | ? | 94322 | The PpDB classification refers to ProteinID = 147365 which is a truncated version |
NIP5;1 | - | NIP4 | Y | 115513 | Misannotated: delete the first amino acid and add exon 1 (68 amino acids) |
NIP5;2 | NIP | NIP4 | Y | 186237 | Misannotated: delete first eleven amino acids and add exon 1 (68 amino acids) |
NIP5;3 | NIP4 | Y | 179749 | Misannotated: delete first seven amino acids and add exon 1 (66 amino acids) | |
NIP6;1 | - | NIP | ? | 16763 | Misannotated: add exon 1 (65 amino acids) and extend last exon 24 amino acids |
PartialNIP#1 | - | Possibly an aquaporini | ? | 103774 | Possibly a full length gene (NIP5) but the genomic sequence is only 825 bp long and interrupted by a 34 kb gap. The model which the classification refers to (ProteinID = 103774) is completely wrong, but in the opposite direction is an exon encoding 103 amino acids. |
PseudoNIP#1 | - | - | ? | 73549 | Pseudogene, NIP-like, delete first 22 amino acids from model |
SIP1;1 | SIP | SIP | ? | 112053 | |
SIP1;2 | SIP | SIP | Y | 200882 | |
GIP1;1 | - | PpGlP1-1 | Y | 171260 | |
HIP1;1 | - | -h | ? | 91611 | Misannotated, we removed 141 aa from beginning of exon 1, 22 aa from end of exon 2 and 15 aa from beginning of exon 3 |
XIP1;1 | - | TIP1 | Y | 71087 | The PpDB classification refers to ProteinID = 26452 which is a truncated version |
XIP1;2 | - | TIP | Y | 71489 | Misannotated, removed 15 amino acids from exon 2 and replaced exon 1 (now 31 aa) The PpDB classification refers to ProteinID = 47381 which is a truncated version |