Cupin: A candidate molecular structure for the Nep1-like protein family

BMC Plant Biology

Table 1 Statistics for NLPs and cupins.

Position	132	133 l^st ligand	134	135 2^nd ligand	136	137	*gap*	138	139 3^rd ligand	193 4^th ligand
type I NLPs	g⁸⁹a⁷k⁴	h⁹⁶y⁴	r ¹⁰⁰	h ¹⁰⁰	d⁹²f⁴y⁴	w ¹⁰⁰	-	e ¹⁰⁰	g³³n³⁰h¹⁹ a¹¹y⁷	h⁹²a⁴p⁴
type II NLPs	g⁸⁹n¹³	h ¹⁰⁰	r⁷⁴k¹³t¹³	h ¹⁰⁰	d ¹⁰⁰	w⁸⁰f¹³l⁷	-	e ¹⁰⁰	h⁸⁰n²⁰	h ¹⁰⁰
3-residue cupins	e³⁰p²⁴a⁹l⁹i⁹x²⁰	h⁸⁵q⁶x⁹	r¹⁸l¹⁸h¹⁵ y¹²q⁹x²⁷	h⁷⁰d¹²x¹⁸	d²⁴t¹⁸e¹² p⁹x³⁶	d²⁷a¹⁸y¹² s⁹x³³	-	e²⁷d²⁴a¹⁵x³³	e³⁹a¹⁸v¹⁵n⁶h⁶x¹⁵	h⁷⁶f⁹m⁶y³l³s³
4-residue cupins	p³⁴l³¹x³⁴	h⁸⁰q¹⁴x⁶	y³¹w¹⁷i⁹k⁹r⁹x²⁵	h⁶⁰n¹⁴x²⁶	p²³s¹⁷q⁹x⁵¹	h¹⁷n¹¹r¹¹d⁶q⁹x⁴³	a²⁹r¹⁷s¹⁷q¹¹h⁹x¹⁷	d²³t¹⁷s¹¹ a⁹e⁹x³¹	e⁶⁶k⁹v⁹l⁶a³g³q³t³	h⁷⁴f⁹V⁹q⁶m³

Statistics for 27 type I NLPs, 15 type II NLPs, 33 3-residue cupins and 35 4-residue cupins. Values are given as percentage of these numbers. x means any other residue.

ISSN: 1471-2229