Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta

Bolte, Kathrin; Kawach, Oliver; Prechtl, Julia; Gruenheit, Nicole; Nyalwidhe, Julius; Maier, Uwe-G

doi:10.1186/1471-2229-8-56

Table 1 Tabular comparison of prokaryotic and eukaryotic homologous of Orf222

From: Complementation of a phycocyanin-bilin lyase from Synechocystis sp. PCC 6803 with a nucleomorph-encoded open reading frame from the cryptophyte Guillardia theta

Organism		PBP	Homologous of Orf222	Length (aa)	CpeT homolog	Slr1649 homolog	Genomic context of the encoded genes
Synechocystis	S. sp. PCC 6803	PC	Slr1649	196			slr1648/ssr2754/ *slr1649*
Crocosphaera watsonii	WH 8501	PE	CwatDRAFT_4238	196		x	*cwatDRAFT_4238* /cwatDRAFT_4297
		PC	CwatDRAFT_0664	215	x		cpeA */cpeT* /cpeY
			CwatDRAFT_5720	149	x		cpeS/*cpeT/cpeR*
Nostoc	Nostoc punctiformes PCC 73102	PEC	Npun02004130	197		x	thrC/ *npun02004130* /npun02004132
		PC	Npun02004123	209	x		cpeS/ *cpeT* /cpeR
			Npun02007740	201	x		-
	Anabaena sp. PCC7120		All5339	199		x	-
			Alr0647	198	x		-
	Anabaena variabilis ATCC 29413		Ava_2579	199		x	-
			Ava_4579	198	x		-
Thermosynecho-coccus elongatus	BP-1	PC	Tlr2156	196		x	tlr2154/hemD/ *tlr2156*
Synechococcus	S. elongates PCC 6301	PC	Syc0738_d	197		x	*syc0738_d* /syc0739_d/ruvC
		PE	Syc0764_d	197	x		-
	S.sp. PCC 7002		CpcT	199			from [10]
	S.sp. CC 9311		Sync_0487	196		x	sync_0484/cpcF/cpcE/ *sync_0487* /cpcA/cpcB/pebB
			Sync_0509	208	x		cpeC/sync_0512/cpeD-1/cpeS/ *sync_0509*
	S. elongates PCC 7942		Synpcc7942_0772	197	x		-
			Synpcc7942_0800	197		x	*synpcc7942_0800* /synpcc7942_0799/ruvC
	S. sp. CC 9605		Syncc9605_0440	204	x		cpeS/ *cpeT* /cpeR
			Syncc9605_0419	208		x	cpcB/cpcA/ *syncc9605_0419* /phycocyanobilin- lyase
	S. sp. WH 8102		SYNW2024	197		x	rpcB/rpcA/ *synw2024* /phycocyanobilin-lyase
			SYNW2003	204	x		cpeC/mpeD/cpeE/cpeS/ *cpeT* /cpeR
	S. sp. CC9902		Syncc9902_1910	200		x	cpcB/cpcA/ *9902_1910* /phycocyanobilin-lyase
			Syncc9902_1887	204	x		cpeS/ *cpeT* /cpeR
Trichodesmium erythraeum	IMS101	PC	Tery_0543	195		x	cyp/cyp/ *tery0543* /transposase
		PE	Tery_0979	209	x		cpeZ/ *cpeT* /cpeF
Calothrix	PCC 7601	PC	CpeT	207	x		cpeS/ *cpeT* /cpeR
		PE
Gloeobacter Violaceus	PCC 7421	PE	Glr1182	202			apcD/ *glr1182* /cpcB/cpcA
		PC	Glr1193	203	x		cpeS/ *cpeT*
			Glr1538	183	x		-
Prochlorococcus marinus	MIT 9211	PE	P9211_07167	192	x		cpeS/ *cpeT*	All adjacent to the α- and β- subunit of phycoerythrin
	CCMP1375		Orf195	195	x		cpeS/ *cpeT*
	MIT 9313		PMT1678	239	x		cpeS/ *cpeT*
	NATL2A		PMN2A_1676	199	x		cpeS/ *cpeT*
	SS120		Pro0342	195	x		pro0347/pucC/ppeC/pro0344/cpeS/ *cpeT*
Guillardia theta		PE	Orf222	222
Cyanidioschyzon merolae		PC	CMK263C	263
Bacteriophage S-PM2	host = Synechococcus		S-PM2p215	175
Oryza sativa			LOC_Os11g32160	275
Arabidopsis thaliana			AT5G51020	269

Cyanobacterial and eukaryotic homologous of Orf222 were obtained by blast search analysis of the NCBI database, as well as the JGI and Cyanobase. The (-) indicates that no adjacent genes in the same orientation were detectable. Orf222 homologous genes are in bold. PBP = phycobiliproteins (except of allophycocyanin), PC = phycocyanin, PE = phycoerythrin, PEC phycoerythrocyanin.

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ISSN: 1471-2229

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