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Table 7 Frequency of non-redundant gene-derived SSRs

From: Oil palm (Elaeis guineensisJacq.) tissue culture ESTs: Identifying genes associated with callogenesis and embryogenesis

SSR motifs

Number of repeats

Total

 

5

6

7

8

9

10

11

12

13

14

15

>15

 

A/T

-

-

-

-

-

27

11

6

1

2

4

8

59

C/G

-

-

-

-

-

7

5

1

3

1

1

2

20

AC/GT

-

-

13

5

8

4

1

 

1

2

1

 

35

AG/CT

-

-

61

50

41

11

11

6

6

6

8

15

215

AT

-

-

15

10

14

4

5

7

1

 

2

10

68

CG

-

-

 

1

        

1

AAC/GTT

3

4

1

         

8

AAG/CTT

23

13

9

4

4

 

1

     

54

AAT/ATT

9

7

3

 

3

1

1

1

   

1

26

ACC/GGT

7

7

       

1

  

15

ACG/CTG

11

5

2

1

        

19

ACT/ATG

12

3

4

1

2

1

      

23

AGC/CGT

12

2

6

2

        

22

AGG/CCT

20

7

1

1

1

1

      

31

AGT/ATC

4

4

 

1

        

9

CCG/CGG

14

6

3

3

1

       

27

AAAG/CTTT

1

1

          

2

AAAT/ATTT

3

1

          

4

AACC/GGTT

 

1

          

1

ACAT/ATGT

2

2

   

1

      

5

ACGG/CCTG

1

           

1

AGAT/ATCT

   

1

        

1

AATAT/ATATT

1

           

1

ACCAT/ATGGT

1

           

1

N

-

-

-

-

-

34

16

7

4

3

5

10

79

NN

-

-

89

66

63

19

17

13

8

8

11

25

319

NNN

115

58

29

13

11

3

2

1

 

1

 

1

234

NNNN

7

5

 

1

 

1

      

14

NNNNN

2

           

2

Total

            

648

  1. Non-redundant genes were derived from 9,584 unigenes assembled from 17,599 ESTs.
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BMC Plant Biology

ISSN: 1471-2229

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