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Figure 1 | BMC Plant Biology

Figure 1

From: Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.)

Figure 1

Phylogenetic relationship among the rice and other glycosyl hydrolase family 35 proteins. Deduced amino acid sequences were aligned using ClustalX program [63] and edited with Gendoc [62], then the tree were created using neighbor joining method and analyzed with 1000 bootstrap replicates, for which the percent reproducibility is shown on the branches that gave higher than 50% reproducibility. A tree was also made by maximum parsimony with the PHYLIP Protpars program, and branches supported by this analysis are shown with thicker lines. The rice sequences are named Os and a number according to the OsBgal numbers in Tables 1 and 2. Arabidopsis thaliana sequences are indicated as At, followed by the AtBGAL numbers of Ahn et al. [12]. Sequences derived from the genome of the bryophyte Physcomitrella patens subsp. patens are given as Pp and the Genbank accession number without the initial "EDQ." Other β-galactosidase or related sequences (and their accession numbers) shown are: Ao, Asparagus officinalis (CAA54525); Aso, Aspergillus oryzae (BAE58662); Bac, Bacillus circulans (O31341); Baf, Bacteroides fragilis (CAH09349 and CAH06328); Cac, Caulobacter crescentus (Q9A4M9); Cam, Caldivirga_maquiingensis (ABW01734); Ce, Caenorhabditis elegans (O76632); Dd (Dictyostelium discoideum) (EAL64656 and XP_635837); Dm, Drosophila melanogaster (Q9VMJ5); Enf, Enterococcus faecalis (AAO81613); Hs, human (Homo sapiens) b-galactosidase (P16278); HsBglk1, human b-galactosidase-1-like protein, (Q6UWU2); Hs Bglk 3, human b-galactosidase-1-like protein 3, (Q8NCI6); Hs_4, human locus 89944 (Q8IW92); Nv, sea anemone (Nematostella vectensis, XP_001631933); Pensp, Penicillium sp. (CAF32457); Rs, radish (Raphanus sativus) (BAD20774); Xac, Xanthomonas campestris (AAM41682); Xao, Xanthomonas oryzae (BAE68425); Xl African three-toed frog (Xenopus laevis): Xl 1 (AAI24928), Xl 2 (AAH74351), Xl 3 (AAH46858).

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