Figure 1From: Genomic and expression analysis of glycosyl hydrolase family 35 genes from rice (Oryza sativa L.)Phylogenetic relationship among the rice and other glycosyl hydrolase family 35 proteins. Deduced amino acid sequences were aligned using ClustalX program [63] and edited with Gendoc [62], then the tree were created using neighbor joining method and analyzed with 1000 bootstrap replicates, for which the percent reproducibility is shown on the branches that gave higher than 50% reproducibility. A tree was also made by maximum parsimony with the PHYLIP Protpars program, and branches supported by this analysis are shown with thicker lines. The rice sequences are named Os and a number according to the OsBgal numbers in Tables 1 and 2. Arabidopsis thaliana sequences are indicated as At, followed by the AtBGAL numbers of Ahn et al. [12]. Sequences derived from the genome of the bryophyte Physcomitrella patens subsp. patens are given as Pp and the Genbank accession number without the initial "EDQ." Other β-galactosidase or related sequences (and their accession numbers) shown are: Ao, Asparagus officinalis (CAA54525); Aso, Aspergillus oryzae (BAE58662); Bac, Bacillus circulans (O31341); Baf, Bacteroides fragilis (CAH09349 and CAH06328); Cac, Caulobacter crescentus (Q9A4M9); Cam, Caldivirga_maquiingensis (ABW01734); Ce, Caenorhabditis elegans (O76632); Dd (Dictyostelium discoideum) (EAL64656 and XP_635837); Dm, Drosophila melanogaster (Q9VMJ5); Enf, Enterococcus faecalis (AAO81613); Hs, human (Homo sapiens) b-galactosidase (P16278); HsBglk1, human b-galactosidase-1-like protein, (Q6UWU2); Hs Bglk 3, human b-galactosidase-1-like protein 3, (Q8NCI6); Hs_4, human locus 89944 (Q8IW92); Nv, sea anemone (Nematostella vectensis, XP_001631933); Pensp, Penicillium sp. (CAF32457); Rs, radish (Raphanus sativus) (BAD20774); Xac, Xanthomonas campestris (AAM41682); Xao, Xanthomonas oryzae (BAE68425); Xl African three-toed frog (Xenopus laevis): Xl 1 (AAI24928), Xl 2 (AAH74351), Xl 3 (AAH46858).Back to article page