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Table 1 Gene ontology based on molecular function for induced genes of arsenic-treated Arabidopsis thaliana Columbia plants.

From: Transcriptional responses of Arabidopsis thaliana plants to As (V) stress

Molecular function Gene ID Locus FC RP
Antioxidant activity Peroxiredoxin Q at3g26060 1.53 151.4
  peroxidase at5g64100 2.50 7.3
  peroxidase at1g05250 1.90 49.0
  peroxidase 57 (PER57) (P57) (PRXR10) at5g17820 1.68 56.6
  peroxidase at1g05240 2.05 16.5
  superoxide dismutase [Cu-Zn], chloroplast at2g28190 4.57 2.3
  superoxide dismutase [Cu-Zn], (SODCC) (CSD1) at1g08830 2.41 8.6
  superoxide dismutase copper chaperone at1g12520 3.16 5.2
Metal ion binding metallothionein-like protein 1A, (MT-1A) at1g07600 1.67 41.9
  ferredoxin, chloroplast at1g10960 1.53 95.6
Kinase activity leucine-rich repeat transmembrane protein kinase at3g24240 1.59 63.2
  Cyclin-dependent protein kinase at5g61650 1.64 66.9
Oxygen binding non-symbiotic hemoglobin 1 (HB1) (GLB1) at2g16060 1.59 94.2
Hydrolase activity ATPase, BadF/BadG/BcrA/BcrD-type family at1g30540 1.62 75.5
  myrosinase-associated protein at1g54010 1.54 90.5
  myrosinase-associated protein at1g54000 1.68 47.6
  xyloglucan:xyloglucosyl transferase at4g37800 1.61 72.0
  glycosyl hydrolase family 1 protein at3g09260 1.67 50.8
Isomerase activity peptidyl prolyl cis-trans isomerase at3g62030 1.64 53.1
Lyase activity ribulose bisphosphate carboxylase small chain 2B    
  ribulose bisphosphate carboxylase small chain 3B    
Alcohol dehydrogenase activity alcohol dehydrogenase (ADH) at1g77120 1.74 46.5
Nitrate reductase activity nitrate reductase 1 (NR1) at1g77760 1.77 41.8
Sulfate reduction 5'-adenylylsulfate reductase (APR3) at4g21990 1.53 112.1
Molecular function unknown Photoassimilate-responsive protein at3g54040 1.59 112.1
  Expressed protein at1g09310 1.67 63.1
  Replication protein At5g35260 1.62 975.3
  Hypothetical protein related to GB:AAD15331 at2g06480 1.58 81.6
  DREPP plasma membrane polypeptide-related at5g44610 1.54 106.5
  Pentatricopeptide repeat-containing protein at1g07590 1.62 74.6
  Meprin and TRAF domain-containing protein at5g26280 1.60 70.8
  Expressed protein at4g39675 1.72 86.0
  C2-domain-containing protein at4g15740 1.76 42.7
  Expressed protein at1g09340 1.62 78.4
  Late embryogenesis abundant 3 family protein at4g02380 1.67 52.1
  Bet v 1 allergen family protein at1g24020 1.54 98.4
  Universal stress protein at3g03270 1.98 19.7
Transporter activity Plasma membrane intrinsic protein 2B (PIP2B) at2g37170 1.70 43.3
  Tonoplast intrinsic protein gamma at2g36830 1.53 104.2
Glutathione transferase activity Glutathione S-transferase GST20; Tau class at1g78370 1.68 53.5
Cell wall structure Glycine-rich protein at2g05510 4.31 2.4
RNA binding Pumilio/Puf RNA-binding domain-containing protein At1g78160 1.60 67.7
Stress response Drought-responsive protein (Di21) at4g15910 1.67 69.6
Electron transport Cytochrome B561 family protein at5g38360 1.56 97.9
Amino acid biosynthesis asparagine synthetase 2 at5g65010 1.74 65.1
Carbonic anhydrase activity Carbonic anhydrase 1, chloroplast at3g01500 1.67 51.0
  1. RP, rank products; FC, fold change. Only genes upregulated above 1.5-fold and meeting a significance criteria of P < 0.001 and FDR of 1% are shown. Rank products analysis reveals that most significantly induced genes display the lowest RP value.