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Table 2 Gene ontology based on molecular function for selected repressed genes of arsenic-treated Arabidopsis thaliana Columbia plants.

From: Transcriptional responses of Arabidopsis thaliana plants to As (V) stress

Molecular function Gene ID Locus FC RP
Catalase activity catalase 3 (SEN2) at1g20620 -1.59 191.7
Peroxidase activity peroxidase at3g49120 -1.77 165.3
  peroxidase at5g64120 -1.84 123.2
  cationic peroxidase at4g25980 -1.52 333.1
Oxidoreductase activity superoxide dismutase [Fe], chloroplast at4g25100 -5.17 1.7
  lipoxygenase at1g72520 -2.41 242.9
  FAD-binding domain-containing protein at1g26380 -1.50 293.0
  cytochrome p450 83B1 at4g31500 -1.71 142.3
  auxin-responsive family protein at5g35735 -1.59 156.4
Metal ion binding germin-like protein at5g39160 -1.51 319.7
  germin-like protein at5g39190 -2.13 27.3
  calcium-binding EF hand family protein at1g76650 -2.00 50.4
  C2-domain containing protein at4g34150 -1.53 313.4
  touch-responsive protein/calmodulin-related at2g41100 -1.64 137.9
  ferritin 1 (FER 1) at5g01600 -1.78 83.0
  ferritin 4 at3g56090 -1.52 201.0
  zinc finger (C2H2 type) protein at3g46090 -1.51 191.2
  zinc finger (C2H2 type) protein at3g46080 -1.59 178.8
  zinc finger (C3HC4 type) protein at5g27420 -1.75 82.2
Hydrolase activity lipase class 3 family protein at1g02660 -1.56 218.8
  invertase/pectin methylesterase family protein at5g62360 -1.75 85.0
  protein phosphatase 2C at2g30020 -1.52 237.4
  phosphoric monoester hydrolase at1g73010 -3.01 7.0
  acid phosphatase type 5 (ACP5) at3g17790 -1.62 290.7
  phosphoric monoester hydrolase at1g17710 -1.88 118.6
  glycosyl hydrolase family 17 protein at3g55430 -1.53 201.2
  glycosyl hydrolase family 17 protein at4g31140 -1.71 248.5
  glycosyl hydrolase family 17 protein at4g19810 -1.96 99.2
  glycosyl hydrolase family 36 protein at5g20250 -1.52 201.8
  xyloglucan endotransglucosylase/hydrolase at4g30280 -1.63 172.2
  xyloglucan endotransglucosylase/hydrolase at4g14130 -2.00 47.9
  xyloglucan endotransglucosylase/hydrolase at5g57560 -1.68 97.3
  nudix hydrolase homolog 4 at1g18300 -1.54 215.9
  MERI-5 endo-xyloglucan transferase at4g30270 -1.96 45.6
Protein binding calmodulin-binding family protein at4g33050 -1.78 88.6
  ankyrin repeat family protein at5g45110 -1.58 252.0
  mitochondrial substrate carrier family protein at4g24570 -1.50 260.2
  polygalacturonase inhibitory protein at5g06860 -1.91 65.0
Chitin binding hevein-like protein (HEL) at3g04720 -1.53 499.9
Carbohydrate binding legume lectin family protein at3g16530 -2.03 37.8
Sugar binding curculin-like lectin family protein at1g78830 -1.64 138.3
ATP binding ATP-dependent Clp protease ATP-binding subunit at5g51070 -1.51 188.7
Jasmonic acid synthesis allene oxide cyclase at3g25760 -1.54 279.6
Peptidase activity vacuolar processing enzyme gamma at4g32940 -1.65 117.1
  subtilase family protein at1g32970 -1.91 81.1
Ligase activity v-box domain-containing protein at2g35930 -1.63 205.5
  asparagine synthetase 1 at3g47340 -1.74 75.5
Transferase activity glutathione S-transferase (GSTF6); phi class at1g02930 -2.10 62.9
  glutathione S-transferase (GSTF7); phi class at1g02920 -2.88 7.6
  branched-chain amino acid amino transferase 2 at1g10070 -1.60 113.8
Nutrient reservoir activity patatin at2g26560 -1.81 84.8
Kinase activity serine/threonine protein kinase 19 at3g08720 -1.55 249.8
Molecular function unknown hypothetical protein no ATG start at3g09922 -2.15 33.6
  expressed protein at2g25510 -1.99 96.9
  expressed protein no ATG start at5g03545 -2.72 16.8
  expressed protein at5g42530 -2.01 147.4
  expressed protein at4g31570 -2.21 45.6
  expressed protein at1g69890 -1.73 79.9
  expressed protein at5g20790 -2.33 32.7
  expressed protein at2g04460 -1.73 190.5
  VQ motif-containing protein at2g22880 -1.83 57.3
  glycine-rich protein at1g07135 -1.53 167.4
  glycine-rich protein at3g04640 -1.81 73.9
  glycine-rich protein at2g05540 -1.85 47.9
  glycine-rich protein at2g05380 -1.59 146.7
  integral membrane family protein at4g15610 -1.58 139.7
  gibberellin-responsive protein at1g22690 -1.88 51.5
  gibberellin-regulated protein (GASA1) at1g75750 -1.70 93.7
  dehydrin (RAB18) at5g66400 -1.70 81.1
  unknown protein – similar to glycosyltransferase at2g41640 -1.54 185.8
  patatin-like protein 8 at4g29800 -1.52 198.7
  phosphate-responsive protein at5g64260 -1.52 221.0
  phosphate-responsive protein at1g35140 -1.58 131.5
  similar to LITAF-domain containing protein at5g13190 -1.54 293.4
Transcription factor activity DRE-binding protein at1g12610 -1.74 116.8
  AP2 domain-containing transcription factor at4g34410 -2.01 50.4
  zinc finger (C2H2 type) protein at3g46090 -1.51 191.2
  zinc finger (C2H2 type) protein at3g46080 -1.59 178.8
  WRKY family transcription factor 33 at2g38470 -1.63 157.9
  WRKY family transcription factor 53 at4g23810 -1.55 278.3
  WRKY family transcription factor 40 at1g80840 -1.88 70.9
  NAC domain-containing protein at5g08790 -1.53 238.7
Senescence-related senescence-associated family protein at5g66040 -1.55 164.0
  senescence/dehydration-associated protein at2g17840 -1.60 256.9
  senescence-associated protein (SEN1) at4g35770 -1.59 123.9
  SRG3 (senescence-related gene 3) at3g02040 -2.65 11.0
Transporter activity MATE efflux family protein at1g61890 -1.80 108.3
Galactolipid biosynthesis monogalactosyldiacylglycerol synthase type C at2g11810 -1.78 130.5
Electron transport cytochrome p450 family 94 subfamily B at3g48520 -1.56 249.8
Guanosine tetraphosphate metabolism RSH 2 (RELA-SPOT HOMOLOG) at3g14050 -1.52 188.7
N-terminal protein myristoylation band 7 family protein at3g01290 -1.54 253.4
  1. RP, rank products; FC, fold change. Only genes upregulated above -1.5-fold and meeting a significance criteria of P < 0.001 and FDR of 1% are shown. Rank products analysis reveals that most significantly repressed genes display the lowest RP value.