From: Survey of extrachromosomal circular DNA derived from plant satellite repeats
Satellite repeat family | Species | Monomer length (bp) | Location(a) | Copies/haploid genome (1C) | References | EccDNA size | Figure |
---|---|---|---|---|---|---|---|
Afa | Triticum aestivum | 340 | P, I, T | 30,000 | (340)n | 3C | |
AT-180 | Arabidopsis thaliana | 179 | C, P | > 55,000 | (179)n | ||
IGS-like | Vicia sativa | 173 | I | 10,000 – 100,000 | [47] | (173)n | 3D |
CentO | Oryza sativa | 155 | C, P | 44,400 | (155)n | 3E | |
Sc119 | Secale cereale | 118 | I, T | 1,500,000 | [56] | (118)n | 3A, B |
VicTR-A | Vicia narbonensis | 69 | I, T | 100,000 – 1,000,000 | (138)n | 2 | |
VicTR-A_c666 | Vicia pannonica | 69/138 | n.d.(b) | n.d.(b) | this publication | continuous arc | 3L |
VicTR-A_c653 | Vicia pannonica | 180 | n.d.(b) | n.d.(b) | this publication | (180)n | 3K |
FokI | Vicia faba | 59 | I | 5,400,000 – 21,000,000 | [24] | continuous arc | 3F |
PisTR-B | Pisum sativum | 50 | P, T | 380,000 | continuous arc | 3G | |
VicTR-B | Vicia grandiflora | 38 | I, T | 1,000,000 – 5,000,000 | [3] | continuous arc | 3H |
VicTR-B_VG-V | Vicia grandiflora | 186 | T | n.d. | [26] | (186)n | 3I |
VicTR-B | Vicia sativa | 38 | I | 1,000,000 – 5,000,000 | [3] | continuous arc |