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Table 1 MapMan BIN structure and number of manual corrections made for each BIN

From: Gene expression profiling in susceptible interaction of grapevine with its fungal pathogen Eutypa lata: Extending MapMan ontology for grapevine

BIN

BIN name

No. of clones in the BIN

No. of corrected clones

% of corrected clones

1

photosynthesis

494

23

4.6

2

major CHO metabolism

165

8

4.8

3

minor CHO metabolism

162

13

8

4

glycolysis

123

9

7.3

5

fermentation

52

0

0

6

gluconeogenesis/glyoxylate cycle

22

2

9

7

oxidative pentose phosphate pathway

42

1

2.4

8

TCA cycle/org. acid transformations

123

8

6.5

9

mitochondrial electron transport/ATP synthesis

156

4

2.6

10

cell wall

595

4

0.7

11

lipid metabolism

495

27

5.9

12

nitrogen metabolism

59

4

6.8

13

amino acid metabolism

459

17

3.7

14

sulphur assimilation

15

0

0

15

metal handling

142

14

9.9

16

secondary metabolism

543

92

16.9

17

hormone metabolism

502

29

5.8

18

cofactor and vitamin synthesis

45

3

6.7

19

tetrapyrrole synthesis

56

14

25

20

stress

948

456

48.1

21

redox

282

15

5.3

22

polyamine metabolism

18

0

0

23

nucleotide metabolism

147

6

4.1

24

biodegradation of xenobiotics

24

1

4.2

25

C1 metabolism

33

0

0

26

miscellaneous enzyme families

1219

69

5.7

27

RNA

2296

85

3.7

28

DNA

422

43

10.2

29

protein

3628

157

4.3

30

signalling

1157

81

7

31

cell

655

12

1.8

33

development

405

31

7.6

34

transport

951

32

3.4

35

35.1. not assigned. no ontology

3276

437

13.3

 

35.2. not assigned. unknown

15571

31

0.2

 

Σ

35246

1728

4.9