Table 3 The numbers and proportions of probe sets exhibiting nonadditive expression and expression levels outside the parental range in each hybrid family at a false discovery rate of 0.15.
| Â | MAS | RMA | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Probe set classification | Heterotic hybrids | Non-heterotic hybrid | Heterotic hybrids | Non-heterotic hybrid | ||||||||
| Â | H12 | H13 | H23 | H12 | H13 | H23 | ||||||
| Â | no. | % | no. | % | no. | % | no. | % | no. | % | no. | % |
Present in at least one parent or hybrid | 24174 | 39.4 | 24296 | 39.6 | 23963 | 39.1 | Â | Â | Â | Â | Â | Â |
Present and differentially expressed (MAS) or differentially expressed (RMA) | 6346 | 26.3 | 6696 | 27.6 | 2986 | 12.5 | 11942 | Â | 12015 | Â | 6209 | Â |
Differentially expressed with nonadditive expression | 279 | 4.4 | 334 | 5.0 | 16 | 0.5 | 591 | 4.9 | 922 | 7.7 | 34 | 0.5 |
Non-additive expression as above or below the parental range | 128 | 45.9 | 156 | 46.7 | 1 | 6.2 | 329 | 55.7 | 428 | 46.4 | 14 | 41.2 |