Skip to main content

Table 2 Top-ten scoring soybean promoters for the presence of Fabaceae seed-storage protein gene promoter motifs

From: Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and Poaceae

Gene ID

PWM rank

Hit id

Hit description

Evalue

Glyma03 g32030.1

1

P04776

Glycinin Gy1

0.0

Glyma19 g34780.1

2

P11828

Glycinin Gy3

0.0

Glyma20 g28650.2

3

P13916

β-conglycinin, alpha chain

0.0

Glyma03 g32020.2

4

P04405

Glycinin Gy2

2.0e-251

Glyma10 g04280.1

5

P02858

Glycinin Gy4

0.0

Glyma13 g18450.1

6

P04347

Glycinin Gy5

3.0e-285

Glyma10 g39150.1

7

P11827

Beta-conglycinin, alpha' chain

3.0e-105

Glyma20 g28640.1

8

P25974

β-conglycinin, beta chain

7.0e-298

Glyma20 g28460.2

9

P25974

β-conglycinin, beta chain

1.0e-269

Glyma03 g39940.1

10

P13917

Basic 7S globulin 1

7.0e-302

  1. Gene ID, gene identifier (soybean genome assembly and annotation Glyma1)
  2. PWM rank, total PWM matching score rank
  3. C-B rank, total Cluster-Buster score rank
  4. Hit ID, hit identifier (Uniprot/Swiss-Prot)
  5. Description, hit description
  6. E value, hit alignment expectation value.