Class | Repeat Type | group | Number | Name | CoffeaEST BLAST hits (>10e-5) | Coffeagenomic sequence BLAST hits (>10e-5) |
---|---|---|---|---|---|---|
I | Non-LTR retrotransposon | LINE | 1 | CcRT_Pricilla | 0 | 0 |
II | Transposons | Non-autonomous transposons | 5 | CcTR_Arnaud-1 | 0 | 3 |
 |  |  |  | CcTR_Arnaud-2 | 0 | 0 |
 |  |  |  | CcTR_Deless-1 | 8 | 21 |
 |  |  |  | CcTR_Deless-2 | 2 | 7 |
 |  |  |  | CcTR_Philippe | 7 | 2 |
 | MITEs |  |  | CcMT_Alex-1 | 40 | 22 |
 |  | ! |  | CcMT_Alex-2 | 49 | 25 |
 |  | ! |  | CcMT_Anis-1 | 13 | 8 |
 |  | ! |  | CcMT_Anis-2 | 8 | 7 |
 |  | ! |  | CcMT_Anis-3 | 11 | 8 |
 |  | ! |  | CcMT_Daniel-1 | 17 | 6 |
 |  | ! |  | CcMT_Daniel-2 | 8 | 12 |
 |  | ! |  | CcMT_Daniel-3 | 15 | 15 |
 |  | ! |  | CcMT_Gerard-1 | 40 | 21 |
 |  | ! |  | CcMT_Gerard-2 | 37 | 14 |
 |  | ! |  | CcMT_Jose-1 | 1 | 8 |
 |  | ! |  | CcMT_Jose-2 | 4 | 7 |
 |  | ! |  | CcMT_Jose-3 | 0 | 0 |
 |  | ! |  | CcMT_Jose-4 | 0 | 1 |
 |  | ! |  | CcMT_Richard | 1 | 0 |
 |  | ! |  | CcMT_Serge | 1 | 9 |
 |  | ! |  | CcMT_Stephane | 1 | 0 |
Total | Â | Â | 23 | Â | Â | Â |