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Table 1 Randomly isolated SSH clones.

From: A compatible interaction of Alternaria brassicicola with Arabidopsis thalianaecotype DiG: evidence for a specific transcriptional signature

Annotation

TAIR number

inc

primers

x

60S ribosomal protein L13A

AT3G24830.1

no

  

SIR sulfite reductase

AT5G04590.1

yes

 

3

PSAL photosystem I subunit L

AT4G12800.1

no

  

Cobalamin-independent methionine synthase

AT5G17920.2

no

MTH

 

glutamine synthase

AT1G66200.1

no

GS

2

alpha dioxygenase 1

AT3G01420.1

no

PDIOX

 

NPQ4 non-photochemical quenching

AT1G44575.1

no

  

protein phosphorylated amino acid binding

AT5G10450.2

no

 

2

FF domain-containing protein 14-3-3 stress related

AT3G19670.1

no

 

2

sorbitol dehydrogenase

AT5G51970.2

no

 

2

26S proteasome AAA-ATPase subunit

AT5G19990.1

no

PATP

2

no hit

    

APX1 ascorbate peroxidase

AT1G07890.7

yes

  

acyl-CoA oxidase

AT5G65110.2

no

  

chloroplastic drought-induced stress protein

AT1G76080.1

no

  

chloroplast-encoded 23S ribosomal

ATCG01180.1

no

 

2

no hit

    

SHM3 serine hydroxymethyltransferase

AT4G32520.1

no

  

no hit

    

PDF1.2 defensin

AT5G44420.1

yes

  

Chitinase

AT2G43590.1

yes

 

6

no hit

    

lipid binding

AT1G04970.2

no

  

sugar transporter

AT1G77210.1

no

  

no hit

    

LHCA4 Photosystem I light harvesting complex gene 4

AT3G47470.1

no

  

ribosomal L6

AT1G74050

no

  

dehalogenase hydrolase

AT2G32150.1

no

  

expressed protein

AT1G07040.1

no

  

protein kinase

AT2G23450.1

no

  

NADPH cyt P450 reductase

AT4G24520.1

no

P450

 

no hit

    

GTP binding

AT1G17470.1

no

  

GST

AT1G65820.1

no

  

RuBisCo

AT5G38410.1

no

 

2

cobalamin independent methionine synthase

AT3G03780.2

no

  

inorganic carbon transport, small stretch

AT4G32340.1

no

  

malate dehydrogenase

AT5G09660.2

no

MDH

 

lipase class 3

AT5G24210.1

no

  

no hits

    

glycosyl hydrolase family 17

AT4G16260.1

yes

 

4

no hits

    

peroxidase 42 (PER42)

AT4G21960.1

no

PRX42

 

speckle-type POZ protein-related

AT3G48360.1

no

  

UDP-glucose 4-epimerase

AT1G12780.1

no

  

cysteine proteinase (RD21A)/thio

AT1G47128.1

no

RD21A

 

chlorophyll A-B binding

AT3G61470.1

no

  

amino acid transporter family

AT3G56200.1

no

  

expressed protein

AT5G23040.2

no

  

glutamate:glyoxylate aminotransfer

AT1G23310.2

no

  

expressed protein

AT5G02020.2

no

  

cysteine synthase, putative/O-ac

AT5G28030.1

no

  

cytochrome b5 domain-containing

AT3G48890.1

yes

  

protein kinase family protein

AT3G51550.1

no

  

chlorophyll A-B binding

AT1G61520.2

no

  

sugar transport protein (STP4),

AT3G19930.1

no

  

expressed protein

AT5G54540.1

no

  

glycine hydroxymethyltransferase

AT4G37930.1

no

  

similar to gamma-glutamylcysteine

AT4G23100.1

yes

  

no hits

    

autophagy 7 (APG7)

AT5G45900.1

no

  

expressed protein

AT3G15450.3

no

  

expressed protein

AT4G19160.3

no

  

expressed protein

AT1G02475.1

no

  

serine-rich protein-related

AT5G25280.2

no

  

GST

AT4G02520.1

yes

  

expressed protein

AT1G26110.1

no

  

GSH1

AT4G23100.1

yes

  

meprin and TRAF homology domain

AT2G32870.1

no

  

PSBO2

AT3G50820.1

no

  

actin-depolymerizing factor 1

AT3G46010.1

no

  

spermidine synthase 2

AT1G70310.1

no

  

cytochrome P450 (CYP83B1)

AT4G31500.1

no

 

2

2-oxoacid-dependent oxidase

AT3G49620.1

no

  

dehydrin (RAB18)

AT5G66400.1

no

  

expressed protein

AT1G64360.1

no

  

auxin-responsive protein

AT3G07390.1

no

  

3-oxoacyl-(acyl-carrier protein)

AT1G24360.1

no

3OA

 

cysteine proteinase

AT5G60360.2

no

  

no hits

    

peroxisomal membrane 22 kDa family

AT5G19750.1

no

  

CBL-interacting protein kinase 6

AT4G30960.1

no

  

coronatine-responsive protein

AT1G19670.1

yes

 

2

hevein-like protein

AT3G04720.1

yes

  

monooxygenase (MO1),

AT4G15760.1

no

MO1

 

KELP transcriptional coactivator p15

AT4G10920.1

no

  

peroxidase 42 (PER42)

AT4G21960.1

no

  

ubiquitin-conjugating enzyme 1

AT1G14400.2

no

  

mannitol transporter

AT4G36670

yes

  

aspartate aminotransferase 3

AT5G11520.1

no

  

basic helix-loop-helix (bHLH) fami

AT5G46760.1

no

  

expressed protein

AT4G25030.2

yes

  

no apical meristem (NAM) family

AT1G69490.1

no

  

expressed protein

AT2G15890.1

no

  

TMS membrane family protein

AT1G16180.1

no

  

expressed protein

AT5G54730.1

no

  

60S ribosomal protein L23A

AT2G39460.1

no

  

CBL-interacting protein kinase 6

AT4G30960.1

no

  

Calmodulin

AT2G41410.1

yes

  

RER1B

AT2G21600.1

no

  

glycine-rich RNA-binding protein

AT4G13850.2

no

  

chlorophyll A-B binding

AT2G05070.1

no

  

cytochrome C

AT1G22840

yes

  
  1. The nucleotide sequences were used to search the TAIR database by BLASTN. A brief annotation and link to the TAIR database are given for each sequence. "No hits" indicates that no Arabidopsis gene was identified; these transcripts might represent fungal genes. The test primer pairs chosen are listed (names refer to Table 2), as well as the number of times (x) that the same gene was identified in the set of cDNA clones sequenced (if more than once). Clones marked "yes" were previously reported [17] in an incompatible Arabidopsis-Alternaria interaction (inc).