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Table 3 Analysis of similarity of unigenes showing A genome-specific expression patterns and no similarity to A. thaliana CDS

From: A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences

Unigene

Length unigene

Cognate BAC

BLAST similarity to other organisms*

Genomic context**

EE447381

597

KBrB044C04

A. thaliana F6A14

Within protein-coding gene

EV084643

624

KBrB036M17

none

Between collinear conserved genes

EX052353

634

KBrB052E10

none

Between collinear conserved genes

EX117393

960

KBrB068E07

none

Within oxidoreductase gene cluster region

EX120283

685

KBrB080C12

none

Between collinear conserved genes

EX123623

634

KBrS011B08

none

Within kinase gene cluster region

EX133623

682

KBrB043M07

none

Between collinear conserved genes

EX140739

619

KBrB043B23

none

Between collinear conserved genes

JCVI_31720

1258

KBrH004B20

none

Between collinear conserved genes

JCVI_41745

490

KBrB043L02

A. thaliana F7O18

Within protein-coding gene

JCVI_6195

720

KBrH009D02

none

Between collinear conserved genes

JCVI_8626

708

KBrH125N23

none

Between collinear conserved genes

  1. * E-value threshold < 1E-10
  2. ** "Collinear conserved genes" refers to genes of B. rapa and A. thaliana that show conserved synteny