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Table 2 Nucleotide polymorphism analysis of the AP2 open reading frame (ORF) in H. vulgare line H106 and H. chilense lines H11 and H208.

From: Comparative genomic analysis and expression of the APETALA2-like genes from barley, wheat, and barley-wheat amphiploids

  Genotype   Genotype
position H106 H11 H208 position H106 H11 H208
21 C G G 618 G C C
27 T G G 708 G T T
33 C G G 711 C T T
63 C T T 738 G C C
80* CCG - - 744 C T T
86 C G G 754* A C C
120 C T T 768 G A A
137* A G G 771 A G G
144 G T T 774* T A A
180 G C C 817* A C C
190* C T T 861 T T G
210 C G G 874 A C C
219 G C C 914* A G G
233* C T C 954 G A A
258 A G G 975 C T T
261 T G G 1086 C G G
300 C G G 1117* T A A
304* A G G 1139* C A A
305* A C C 1141* T C C
354 C G C 1143* C G G
402 T C C 1212 T C C
450 C T T 1270* - GCGCCG GCGCCG
453 A G G 1285* TCA - -
576 T C C 1289* C T C
597 C G G 1294 C G G
612 G A A 1315 G C C
  1. All the nucleotide changes (SNPs, insertions and deletions) and their positions with respect to the sequence of H. vulgare cv Betzes (line H106) are shown. Polymorphisms causing changes in the amino acid sequence are indicated in bold and with asterisks.