Skip to main content
Figure 2 | BMC Plant Biology

Figure 2

From: Chilling acclimation provides immunity to stress by altering regulatory networks and inducing genes with protective functions in Cassava

Figure 2

Experiment validation of reversely expressed genes from CA/NC to CCA/CA and differentially expressed genes specific to CCA or CS. The reversed expression patterns of four translation-related genes are firstly shown in (A) RNA-Seq data and are then confirmed by (B) qRT-PCR. The expression patterns of genes, which are associated with nutrient reservoir specific to CCA and which are associated with viral reproduction specific to CS are shown in (C) RNA-Seq data and are then confirmed by (D) qRT-PCR. We remove the prefix of gene names for simplicity; e.g. “018150 m” is short for “Cassava4.1_018150m”. The expression level of each gene is averaged among three replicates and is normalized by Cassava actin gene in the qRT-PCR assay. The y-axis indicates the relative expression level of a gene in a given condition with respect to the normal control (NC) in log scale. (Gene list, 018150 m: ubiquitin 6, 017802 m: ribosomal protein L11 family protein; 019383 m: ribosomal protein L31e family protein; 020116 m: zinc-binding ribosomal protein family protein; 015731 m and 029709 m: RmlC-like cupins superfamily protein; 000174 m: unknown protein; 003690 m: ROP interactive partner 3).

Back to article page