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Table 2 Subset of the most representative differently expressed genes

From: Contrasting nitrogen fertilization treatments impact xylem gene expression and secondary cell wall lignification in Eucalyptus

Gene ID (EucDS)

Gene ID (TAIR)

Description

N+/N-

Fold

P-value

Nitrogen/Amino acids metabolism

  

CD668569.1

AT4G13930.1

Serine hydroxymethyltransferase 4

-1,86

6,3E-11

contig_23319

AT4G13930.1

Serine hydroxymethyltransferase 4

-1,61

3,9E-03

Contig7054

AT4G13930.1

Serine hydroxymethyltransferase 4

-1,85

6,9E-03

de_novo_15907

AT4G13930.1

Serine hydroxymethyltransferase 4

-1,70

1,0E-16

contig_8461

AT2G27820.1

Prephenate dehydratase 1/ Arogenate dehydratase3

-2,26

1,5E-09

contig_15070

AT2G27820.1

Prephenate dehydratase 1/ Arogenate dehydratase3

-2,46

3,3E-03

contig_10858

AT1G08250.1

Arogenate dehydratase 6

-2,19

4,2E-06

de_novo_11386

AT1G08250.1

Arogenate dehydratase 6

-2,71

3,5E-05

de_novo_11507

AT3G44720.1

Arogenate dehydratase 4

-2,33

8,9E-51

contig_10937

AT5G18170.1

Glutamate dehydrogenase 1

-4,14

2,4E-03

de_novo_11901

AT1G12940.1

Nitrate transporter 2.5

-6,57

3,2E-12

de_novo_12308

AT4G13940.4

S-adenosyl-L-homocysteine hydrolase

-1,70

6,7E-03

de_novo_11480

AT1G32450.1

Nitrate transporter 1.5

2,32

2,9E-04

de_novo_11781

AT1G32450.1

Nitrate transporter 1.5

2,25

5,5E-03

contig_94502

AT1G37130.1

Nitrate reductase 2

3,63

6,3E-03

de_novo_11752

AT1G37130.1

Nitrate reductase 2

3,30

3,7E-24

CU395994

AT2G15620.1

Nitrite reductase 1

7,79

7,6E-19

de_novo_11688

AT2G15620.1

Nitrite reductase 1

7,57

8,4E-03

CD670065

AT2G15620.1

Nitrite reductase 1

6,81

1,4E-04

CD669078

AT2G15620.1

Nitrite reductase 1

6,70

4,3E-03

de_novo_11644

AT2G15620.1

Nitrite reductase 1

6,65

1,7E-09

CU396904

AT2G15620.1

Nitrite reductase 1

6,53

6,6E-02

de_novo_19746

AT1G77760.1

Nitrate reductase 1

4,46

1,2E-08

de_novo_11746

AT5G40850.1

Urophorphyrin methylase III

11,16

6,4E-07

CD668172

AT5G35630.3

Glutamine synthetase 2

2,53

7,5E-10

contig_20989

AT5G35630.3

Glutamine synthetase 2

2,43

2,7E-04

de_novo_11573

AT5G57685.1

Glutamine dumper 3

4,38

8,1E-02

de_novo_11536

AT5G57685.1

Glutamine dumper 3

1,84

1,8E-05

Phenylpropanoid metabolism/Lignin Biosynthesis

  

contig_10482

AT3G53260.1

Phenylalanine ammonia-lyase 2

-1,56

1,4E-02

contig_21173

AT3G53260.1

Phenylalanine ammonia-lyase 2

-1,68

2,4E-04

contig_16352

AT3G53260.1

Phenylalanine ammonia-lyase 2

-1,65

1,8E-01

contig_3622

AT2G30490.1

Cinnamate-4-hydroxylase

-1,61

3,7E-02

Contig7339

AT2G30490.1

Cinnamate-4-hydroxylase

-1,70

2,1E-02

BD224437.1

AT2G30490.1

Cinnamate-4-hydroxylase

-1,76

8,1E-04

contig_6919

AT1G51680.1

4-coumarate:CoA ligase 1

-1,65

3,4E-02

contig_390

AT4G36220.1

Ferulic acid 5-hydroxylase 1

-1,56

7,5E-02

contig_72476

AT2G40890.1

Cytochrome P450, C3H

-3,48

8,3E-03

de_novo_24790

AT5G54160.1

Caffeic O-methyltransferase1

-1,53

9,5E-32

contig_3127

AT5G60020.1

Laccase 17

-1,56

5,6E-04

contig_23816

AT5G60020.1

Laccase 17

-1,50

1,7E-03

Transcription factors

   

contig_3124

AT4G22680.1

Myb domain protein 85

-1,57

4,6E-03

BD377759.1

AT2G23290.1

Myb domain protein 70

-2,14

8,5E-03

contig_18752

AT2G27580.2

A20/AN1-like zinc finger family protein

-2,14

7,4E-02

contig_41808

AT2G27580.2

A20/AN1-like zinc finger family protein

-1,53

6,2E-03

Contig3627

AT3G49930.1

C2H2 and C2HC zinc fingers superfamily protein

-2,08

8,9E-04

contig_6574

AT3G54810.1

Plant-specific GATA-type zinc finger transcription factor family protein

-1,78

1,6E-126

contig_8449

AT1G14920.1

GRAS family transcription factor family protein

-1,98

9,4E-07

contig_3905

AT1G14920.1

GRAS family transcription factor family protein

-1,53

5,7E-03

contig_4005

AT1G78070.1

Transducin/WD40 repeat-like superfamily protein

-1,91

6,5E-03

contig_17263

AT1G24530.1

Transducin/WD40 repeat-like superfamily protein

-1,68

6,0E-02

de_novo_11342

AT3G20640.1

Basic helix-loop-helix (bHLH) DNA-binding superfamily protein

-1,82

7,3E-03

contig_7306

AT1G32640.1

Basic helix-loop-helix (bHLH) DNA-binding family protein

-1,54

7,5E-02

contig_16146

AT2G44745.1

WRKY family transcription factor

-1,55

8,3E-04

contig_4484

AT1G10200.1

GATA type zinc finger transcription factor family protein

2,41

4,9E-03

contig_89946

AT1G80840.1

WRKY DNA-binding protein 40

1,65

4,1E-02

CU401821

AT1G80840.1

WRKY DNA-binding protein 40

2,38

4,9E-11

contig_64900

AT2G38470.1

WRKY DNA-binding protein 33

1,79

1,5E-01

de_novo_11651

AT3G02380.1

CONSTANS-like 2

2,10

2,8E-03

de_novo_12111

AT3G02380.1

CONSTANS-like 2

1,79

1,4E-09

CD668471.1

AT3G02380.1

CONSTANS-like 2

2,00

7,2E-12

de_novo_11383

AT3G49940.1

LOB domain-containing protein 38

6,75

2,8E-43

contig_74960

AT4G31800.2

WRKY DNA-binding protein 18

1,73

1,4E-02

contig_74953

AT5G08790.1

NAC domain transcriptional regulator superfamily protein, ATAF2

1,95

1,7E-06

de_novo_11667

AT5G39660.2

Cycling DOF factor 2

1,94

3,5E-05

contig_12125

AT5G39660.2

Cycling DOF factor 2

1,71

1,7E-03

Other processes

    

de_novo_11604

AT2G16060.1

Hemoglobin 1

87,88

1,9E-01

CU401963

AT5G14780.1

Formate dehydrogenase

99,23

6,5E-15

Contig5452

AT5G14780.1

Formate dehydrogenase

69,36

1,7E-05

contig_92267

AT5G14780.1

Formate dehydrogenase

57,00

1,1E-06

contig_94429

AT5G14780.1

Formate dehydrogenase

42,23

4,5E-02

CU396775

AT5G14780.1

Formate dehydrogenase

27,80

3,8E-03