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Table 1 Cyanidin-based anthocyanin biosynthetic genes annotation and accession numbers in GenBank or CarrotDB

From: Transcript profiling of structural genes involved in cyanidin-based anthocyanin biosynthesis between purple and non-purple carrot (Daucus carotaL.) cultivars reveals distinct patterns

Gene family

Annotation

GenBank ID

Scaffolds ID in CarrotDB

Predict genes ID in CarrotDB

PAL

PAL1

D85850.1

scaffold_229, 168181

g443,75570

 

PAL3/PAL4

AB089813.1/ AB435640.1

scaffold_16648, 16649, 169243

g17456, 17457, 76158

CA4H

CA4H1

KM359961

scaffold_25749

g24733

 

CA4H2

KM359962

scaffold_45729

g36870

4CL

4CL1

KM359963

scaffold_1380

g1988

 

4CL2

KM359966

scaffold_2619

g3566

CHS

CHS1

AJ006779.1

scaffold_27333, 21408

g25908, 21339

 

CHS2/ CHS9

D16255.1/ D16256.1

scaffold_139899, 4932

g61298, 6227

CHI

CHI1

KM359964

scaffold_8876

g10389

F3H

F3H1

AF184270.1

scaffold_17226

g17950

F3'H

F3'H1

KM359965

scaffold_36531

g31974

DFR

DFR1

AF184271.1

scaffold_1955, 1956

g31520, 2745

LDOX

LDOX1/ LDOX2

AF184273.1/ AF184274.1

scaffold_20348, 20349, 20350

g20467, 78025, 20472

  1. Gene abbreviations: PAL, Phenylalanine ammonia-lyase; CA4H, Cinnamate 4-hydroxylase; 4CL, 4-coumaroyl-coenzyme A ligase; CHS, Chalcone synthase; CHI, Chalcone-flavonone isomerase; F3H, Flavanone 3-hydroxylase; F3′H, Flavonoid 3′- hydroxylase; DFR, Dihydroflavonol 4-reductase; LDOX, Leucoanthocyanidin dioxygenase.