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Table 1 Soybean–SCN pathogenesis RNA–Seq summary

From: Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction

SCN population

Time point

SRA

Reads

Filtered

Aligns to soybean

Uninoculated

Control

SRR849499

2,141,303

401,913 (19%)

1,201,664 (69%)

Race3

6 dai

SRR847313

8,069,844

1,130,372 (14%)

4,640,251 (67%)

 

8 dai

SRR848922

7,319,342

745,019 (10%)

4,135,793 (63%)

Race14

6 dai

SRR848921

9,160,690

1,624,774 (18%)

4,486,182 (59%)

 

8 dai

SRR849498

4,078,344

637,475 (15%)

2,193,208 (63%)

Total

–

–

30,769,523

4,539,553 (14%)

16,657,098 (63%)

  1. Summary of reads generated throughout a Race 3 and Race 14 SCN inoculation. Low quality reads were subtracted from the total read–set. Remaining reads were then mapped to the soybean transcriptome.