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Table 5 GO Process enrichment of suppressed soybean genes

From: Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction

  

–log 10FDR

Term

Description

Race 3

Race 14

GO:0006066

Alcohol metabolic process

0

2.52

GO:0016051

Carbohydrate biosynthetic process

4.56

7.92

GO:0044262

Cellular carbohydrate metabolic process

0

2.17

GO:0043094

Cellular metabolic compound salvage

2.88

5.53

GO:0006091

Generation of precursor metabolites and energy

83.18

87.31

GO:0006544

Glycine metabolic process

2.20

0

GO:0006096

Glycolysis

1.48

3.95

GO:0018130

Heterocycle biosynthetic process

6.42

4.20

GO:0019318

Hexose metabolic process

1.79

5.33

GO:0042743

Hydrogen peroxide metabolic process

2.66

0

GO:0006555

Methionine metabolic process

2.12

0

GO:0006740

NADPH regeneration

0

2.37

GO:0006733

Oxidoreduction coenzyme metabolic process

0

2.92

GO:0009853

Photorespiration

6.48

9.04

GO:0015979

Photosynthesis

215.70

211.61

GO:0009765

Photosynthesis, light harvesting

81.37

68.25

GO:0009768

Photosynthesis, light harvesting in photosystem I

52.95

39.57

GO:0019684

Photosynthesis, light reaction

132.78

130.48

GO:0009767

Photosynthetic electron transport chain

43.33

47.11

GO:0009773

Photosynthetic electron transport in photosystem I

23.73

28.55

GO:0042549

Photosystem II stabilization

4.76

9.29

GO:0046148

Pigment biosynthetic process

8.81

11.14

GO:0042440

Pigment metabolic process

14.26

17.96

GO:0018298

Protein-chromophore linkage

51.69

42.96

GO:0043467

Regulation of generation of precursor metabolites and energy

1.88

4.38

GO:0042542

Response to hydrogen peroxide

0

5.20

GO:0010035

Response to inorganic substance

0

6.25

GO:0009416

Response to light stimulus

11.30

13.85

GO:0009314

Response to radiation

10.71

13.19

GO:0000302

Response to reactive oxygen species

0

3.73

  1. GO Process enrichment from the top 750 suppressed transcripts. Almost all GO Processes were suppressed in a race–independent manner. The suppressive cocktail of SCN effectors are revealed in the down–regulation of processes associated with photosynthesis, metabolism and biosynthesis.