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Table 4 Differentially expressed stress-related genes

From: Flavonoid supplementation affects the expression of genes involved in cell wall formation and lignification metabolism and increases sugar content and saccharification in the fast-growing eucalyptus hybrid E. urophylla x E. grandis

 

FPKM

Gene ID

Annotation

CT

CH

NAR

CHSTOP

NARSTOP

Eucgr.H05081.4

ALDH3I1

4.84

0.93*

1.11*

1.60

5.34

Eucgr.C00112.1

CIA2

0.70

12.29*

14.05*

17.42*

3.57

Eucgr.K01387.2

COL9

3.33

26.78*

22.63*

18.02*

2.56

Eucgr.C03449.1

HSFA2

0.29

14.55*

12.98*

14.36*

18.58*

Eucgr.C03456.1

HSFA2

0.09

2.67*

3.64*

2.25*

1.45

Eucgr.C00873.1

HSFA2

1.92

24.38*

18.82*

14.75*

7.94

Eucgr.C03434.1

HSFA2

0.31

6.75*

6.22*

6.19*

2.03

Eucgr.C01043.1

HSFC1

2.92

122.26*

116.87*

96.98*

13.96

Eucgr.J01981.1

HSP18.2

2.00

34.43

50.34

69.86*

105.48*

Eucgr.J01980.1

HSP18.2

0.02

12.20*

11.59*

9.15*

26.39*

Eucgr.J01959.1

HSP18.2

3.19

142.90*

89.76*

58.22*

148.21*

Eucgr.J01958.1

HSP18.2

2.68

115.32*

90.34*

65.56

100.03

Eucgr.J01979.1

HSP18.2

0.34

17.61*

19.94*

14.63*

27.21*

Eucgr.J01958.1

HSP18.2

2.68

115.32*

90.34*

65.56

100.03

Eucgr.J01979.1

HSP18.2

0.34

17.61*

19.94*

14.63*

27.21*

Eucgr.J01977.1

HSP18.2

0.37

9.43*

8.59*

7.08

19.26*

Eucgr.J01964.1

HSP18.2

13.65

145.21*

119.05*

111.04

251.88*

Eucgr.J01985.1

HSP18.2

0.31

22.25*

16.62*

13.21*

33.33*

Eucgr.J01982.1

HSP18.2

0.21

8.65*

6.06*

4.24

13.03*

Eucgr.F04479.1

HSP20-like

0.12

35.55*

40.44*

23.84*

57.92*

Eucgr.I02136.1

HSP20-like

1.68

226.73*

147.43*

90.02*

259.35*

Eucgr.J01969.1

HSP20-like

4.89

192.23*

134.53*

103.09*

310.44*

Eucgr.G00061.1

HSP20-like

9.45

834.94*

858.21*

726.74*

814.87

Eucgr.E00433.1

HSP20-like

3.35

295.94

205.55*

185.03

165.89

Eucgr.F02898.1

HSP20-like

2.76

525.99*

343.17*

280.68*

342.59*

Eucgr.A01416.1

HSP21

0.08

12.40*

7.60*

4.34*

0.29

Eucgr.H04692.1

HSP21

2.97

83.31*

59.57*

43.11*

313.22*

Eucgr.J03127.1

Hsp70b

8.27

1576.75

1347.55*

881.92

925.42

Eucgr.H03518.1

HSP70T-2

6.06

282.04*

218.12*

152.91

249.47

Eucgr.K00295.1

HSP90-1

2.11

46.13*

38.25

35.52*

62.69*

Eucgr.F03704.1

MSL6

1.45

27.74

21.67*

11.53*

10.03

Eucgr.H02896.1

MYB305

0.07

6.57*

8.20*

6.34*

1.14

Eucgr.C00618.1

Oleosin

0.50

38.75*

24.66*

18.36*

2.85

Eucgr.F01003.1

PAT1

2.30

43.54*

47.40*

43.89*

6.02

Eucgr.K00237.1

PEBP

0.04

115.83*

64.41*

61.47*

11.49*

Eucgr.B00176.2

PIMT2

3.86

153.25*

109.01*

82.97*

57.39*

Eucgr.G01510.1

RLK

1.71

10.40*

11.17*

11.20*

6.80

Eucgr.F01854.1

TRX1

4.16

598.03*

295.93*

191.61*

25.01

Eucgr.G02440.1

UGT73B2

0.00

5.46*

5.80*

3.33*

4.06*

Eucgr.L03261.1

UGT73B3

1.44

47.41*

27.81*

19.98*

75.67*

Eucgr.G02259.1

UGT73B3

0.00

2.73*

2.14*

1.18*

3.10*

Eucgr.I00409.1

UGT73B3

0.06

3.27*

4.18*

2.91*

0.60

Eucgr.B02291.1

UGT76E11

10.86

52.79*

42.69*

39.45

45.69

Eucgr.K01389.2

XERICO

19.81

1,348.64*

796.35*

569.70*

120.14

  1. FPKM -fragments per kilobase of exon per million fragments mapped. CT - control; CH - prolonged naringenin-chalcone supp; NAR - prolonged naringenin supp; CHSTOP- short-term naringenin-chalcone supp; NARSTOP - short-term naringenin sup *Denotes differential expression.
  2. Abbreviations: ALDH3I1 -aldehyde dehydrogenase 3I1, CIA2 chloroplast import apparatus 2, COL9 CONSTANS-like 9, HSFA2 heat shock transcription factor A2, HSFC1 heat shock transcription factor C1, HSP18.2 heat shock protein 18.2, HSP20 like chaperones superfamily protein, HSP21 heat shock protein 21, Hsp70b heat shock protein 70B, HSP70T-2 heat-shock protein 70-T-2, HSP90.1 heat shock protein 90.1, MSL6 mechanosensitive channel of small conductance-like 6, MYB305 myb domain protein 305, Oleosin family protein; PAT1 GRAS family transcription factor, PEBP -phosphatidylethanolamine-binding protein family protein, RLK receptor lectin kinase, TRX1 thioredoxin H-type 1, UGT73B2 UDP-glucosyltransferase 73B2, UGT73B3 UDP-glucosyl transferase 73B3, UGT76E11 UDP-glucosyl transferase 76E11, XERICO RING/U-box superfamily protein.