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Figure 2 | BMC Plant Biology

Figure 2

From: Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case

Figure 2

Comparison of annotations of the PGSC genes by different pipelines. Each similarity matrix shows all pairwise similarities between the pipelines. (A) Structure-free Jaccard similarity of the MF predictions of the pipelines. (B) Jaccard similarity of the gene sets covered by each pipeline. (C) Structure-based similarity between the GO MF predictions of the pipelines. Unlike (A), the calculation here used the GO hierarchy to quantify the similarity of the predictions (see Methods). (D) Structure-based similarity between the GO BP predictions of the pipelines.

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