Skip to main content

Table 4 Genes predicted as causal genes for days to heading a

From: Prioritization of candidate genes in QTL regions based on associations between traits and biological processes

Gene

Available existing annotation

LOC_Os01g68620

signal peptide peptidase-like 2B

LOC_Os01g70920

cullin-1

LOC_Os01g74020

MYB family transcription factor

LOC_Os03g54170

OsMADS34 - MADS-box family gene with MIKCc type-box

LOC_Os03g61570

expressed protein

LOC_Os05g02300

Core histone H2A/H2B/H3/H4 domain containing protein

LOC_Os07g41370

OsMADS18 - MADS-box family gene with MIKCc type-box

LOC_Os07g46180

PWWP domain containing protein

LOC_Os07g08880

ES43 protein

LOC_Os09g39270

ZOS9-20 - C2H2 zinc finger protein

LOC_Os10g40810

GATA zinc finger domain containing protein

  1. aGenes prioritized in QTL regions for trait days to heading based on their predicted function ‘regulation of flower development’, and present as single gene annotated with this term in the respective QTL region. Without the last requirement, in total 79 genes were prioritized in the QTL regions for this trait based on the BP ‘regulation of flower development’ (Additional file 3: Table S5).