Table 1 Classification of putative transcription factor of Casuarina glauca and Alnus glutinosa into families
TF family | Casuarina glauca | Alnus glutinosa | Total TF | Domain description |
|---|---|---|---|---|
AP2 | 3 | 2 | 5 | AP2 domain |
ARF | 6 | 4 | 10 | Auxin response factor |
ARR-B | 1 | 1 | Response regulator contain MYB-like DNA binding domain ARRM (type B) | |
B3 | 1 | 1 | AP2 like transcriptional factor | |
BBR/BPC | 1 | 1 | Basic pentacysteine | |
BES1 | 1 | 1 | BRI1-EMS-SUPPRESSOR 1 | |
bHLH | 8 | 15 | 23 | The basic/helix-loop-helix proteins |
bZIP | 8 | 10 | 18 | Basic Leu zipper (bZIP) TF |
C2H2 | 18 | 20 | 38 | Zinc finger, C2H2 type |
C3H | 2 | 3 | 5 | Zn-finger, C-x8-C-x5-C-x3-H type |
CAMTA | 1 | 1 | Calmodulin binding transcription factors | |
Co-like | 2 | 2 | 4 | CONSTANS TF,defined by zinc finger N-terminal and CCT domain C-terminal |
DBB | 4 | 3 | 7 | Double B-box zinc finger |
Dof | 5 | 1 | 6 | DNA binding with one finger |
EIL | 1 | 2 | 3 | Ethylene insensitive 3 |
ERF | 15 | 24 | 39 | Ethylene response factor |
FAR1 | 2 | 1 | 3 | Far-red impaired responsive directly active transcription of FHY1 and FHL |
G2-like | 7 | 7 | Homeodomain-like, GLK proteins belonging GARP superfamily | |
GATA | 1 | 3 | 4 | Zinc-finger Animal contain two C-x2-Cx17-C-x2-C domains type-IV |
GRAS | 11 | 8 | 19 | SCARECROW (SCR), SHORTROOT (SHR) and DELLA domains |
GRF | 1 | 1 | GROWTH-REGULATING FACTOR | |
HB-other | 1 | 1 | 2 | Homeobox domain |
HD-ZIP | 3 | 6 | 9 | HD-ZIP protein, N terminus |
HSF | 1 | 4 | 5 | Heat stress transcription factors, DNA binding C-terminal domains |
LBD | 1 | 1 | LOB domain | |
LSD | 2 | 3 | 5 | zinc finger domains, CxxCxRxxLMYxxGASxVxCxxC type |
MIKC | 14 | 5 | 19 | MADS-box, MIKC type |
MYB | 20 | 19 | 39 | MYB DNA-binding domain |
MYB-related | 3 | 3 | 6 | N-terminal myb-domain |
NAC | 14 | 15 | 29 | No apical meristem (NAM), N-terminal DNA-binding domain and a C-terminal domain |
NF-YA | 2 | 4 | 6 | subunit NF-YA, Gln(Q)- and Ser/Thr(S/T)-rich NH2 termini, and a DNA-binding domain |
NF-YB | 1 | 4 | 5 | NF-Y TF, subunit NF-YB related H2B histones, DNA binding domain |
NF-YC | 4 | 5 | 9 | NF-Y TF, subunit NF-YC related H2A histones, DNA binding domain |
Nin-like | 2 | 2 | Plant regulator RWP-RK | |
RAV | 1 | 1 | B3 domain, DNA binding domain and single AP2/ERF domain | |
S1Fa-like | 1 | 1 | 2 | S1F binding site, NLS and a putative DNA binding helix |
SBP | 1 | 1 | Two zinc-binding sites, Cys3HisCys2HisCys or Cys6HisCys sequence motif | |
SRS | 1 | 1 | Zn-finger, LRP1 type | |
TALE | 5 | 3 | 8 | Homeodomain |
TCP | 2 | 2 | 4 | TCP TF |
Trihelix | 1 | 2 | 3 | DNA-binding domain, GT factor |
WOX | 1 | 1 | Homeobox domain, WOX class | |
WRKY | 15 | 15 | 30 | DNA-binding WRKY |
Whirly | 1 | 1 | DNA-binding, Defense response | |
ZF-HD | 1 | 1 | Homeobox domain, ZF-HD class | |
Total TF | 202 | 195 | 397 | |
Total families | 40 | 35 | 45 |