Skip to main content

Table 5 Genes annotated on the BAC metacontig

From: Columnar apple primary roots share some features of the columnar-specific gene expression profile of aerial plant parts as evidenced by RNA-Seq analysis

Gene Name

Position on BAC Metacontig (strand)

Position on Chr 10 of GD Genome

Probable Function

At1g08530-like

49164 – 52233 (+)

18743425 – 18746497

unknown

dmr6-like

93949 – 96036 (+)

18814292 – 18815452

defense reaction

MDP0000927098 (ATL5K-like)

103945 – 104770 (+)

18853768 – 18854596

ubiquitination

MDP0000927091 (Autophagy9-like)

119780 – 126200 (−)

18832988 – 18836788

recycling of cell components

5NG4-like

140776 – 142998 (−)

18862782 – 18864480

auxin-induced transporter

MDP0000912172 (PP2C15-like)

145267 – 146261 (+)

18866768 – 18867762

serine/threonine phosphatase

MDP0000934866 (At1g06150-like)

169780 – 175840 (+)

18884175 – 18886818

bHLH transcription factor

MDP0000163720 (ACC1-like)

184078 – 185923 (−)

18905698 – 18907541

ethylene biosynthesis

  1. Eight genes were found to be expressed in at least one of the tissues investigated and were annotated on the BAC metacontig. Their name, position on the BAC metacontig and on chromosome 10 of the Golden Delicious (GD) draft genome sequence [36] as well as the possible function (according to BLAST searches) are indicated. bHLH, basic helix-loop-helix.