Allelic diversity in the transcriptomes of contrasting rust-infected genotypes of Lathyrus sativus, a lasting resource for smart breeding

Table 2 Classification of contigs according to their differential expression in the susceptible and resistant genotype upon infection with U. pisi

Expression pattern group	Feature	# of contigs
A	Up-regulated in Resistant	814
A	Up-regulated in Susceptible	814
B	Up-regulated in Resistant	32
B	Up-regulated in Susceptible, higher in Susceptible	32
C	Up-regulated in Resistant, higher in Resistant	56
C	Up-regulated in Susceptible	56
D	Up-regulated in Susceptible	319
E	Up-regulated in Resistant	576
F	Down-regulated in Resistant	2,516
F	Down-regulated in Susceptible	2,516
G	Down-regulated in Susceptible	548
H	Down-regulated in Resistant	1,606
Total		134,914

Up regulated: (log2 > = 2; q-value ≤ 0.05); Down-regulated: (log2 ≤ −2; q-value ≤ 0.05); higher in Susceptible: (log2 fold change between all resistant and susceptible genotype contigs < = −2; q-value ≤ 0.05); higher in Resistant: (log2 fold change between all resistant and susceptible genotype contigs > = 2; q-value ≤ 0.05).

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