Table 2 Identification of SNP loci in significant linkage disequilibrium (LD) with major gene ( Cr2 ) resistance
Contig-SNP IDs | R^2 | pDiseq | N | Candidate group | SNP array |
|---|---|---|---|---|---|
A05_contig_4105 | 0.808898 | 2.62E-39*** | 179 | DEG | 1st |
F0_contig_48562 | 0.080057 | 2.29E-04* | 179 | RGA | 1st |
F0_contig_3186 | 0.140014 | 3.71E-07*** | 188 | RGA | 2nd |
F0_contig_9161 | 0.072281 | 2.87E-04* | 188 | RGA | 2nd |
F0_contig_29965 | 0.067681 | 4.10E-04* | 188 | HCG | 2nd |
F0_contig_3704 | 0.067235 | 4.21E-04* | 188 | HCG | 2nd |