Table 1 Characteristics of 5791 SSRs identified based on transcriptome data of Elaeis guineensis
Motifs | Repeat number | Total | Average repeat number | Average repeat length(bp) | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | >18 | ||||
a/t | - | - | - | - | - | - | - | 398 | 272 | 232 | 193 | 147 | 83 | 65 | 310 | 1700 | 15.19 | 15.19 |
c/g | - | - | - | - | - | - | - | 10 | 8 | 5 | 0 | 2 | 4 | 0 | 12 | 41 | 15.85 | 15.85 |
tc/ga | - | - | - | 137 | 131 | 128 | 61 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 460 | 9.26 | 18.52 |
ct/ag | - | - | - | 205 | 152 | 127 | 59 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 545 | 12.79 | 25.58 |
at | - | - | - | 14 | 10 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 34 | 9.03 | 18.06 |
ta | - | - | - | 7 | 3 | 8 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 19 | 9.16 | 18.32 |
ac/gt | - | - | - | 3 | 5 | 4 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 9.69 | 19.38 |
ca/tg | - | - | - | 15 | 16 | 6 | 7 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 47 | 9.21 | 18.42 |
cg | - | - | - | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 9 | 18 |
gc | - | - | - | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 9 | 18 |
gag/ctc | 191 | 95 | 42 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 331 | 5.58 | 16.74 |
tgc/gca | 73 | 38 | 34 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 145 | 5.73 | 17.19 |
cag/ctg | 63 | 44 | 39 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 148 | 5.86 | 17.58 |
cgg/ccg | 127 | 66 | 34 | 7 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 234 | 9.22 | 27.66 |
aag/ctt | 74 | 36 | 22 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 133 | 5.62 | 16.86 |
ggt/acc | 36 | 21 | 7 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 65 | 5.58 | 16.74 |
ggc/gcc | 120 | 59 | 35 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 217 | 5.66 | 16.98 |
gat/atc | 25 | 17 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 45 | 5.51 | 16.53 |
tct/aga | 73 | 43 | 34 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 154 | 5.91 | 17.73 |
tga/tca | 58 | 18 | 9 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 87 | 5.48 | 16.44 |
gac/gtc | 19 | 6 | 4 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 31 | 5.81 | 17.43 |
tcc/gga | 151 | 69 | 39 | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 264 | 5.62 | 16.86 |
gaa/ttc | 86 | 27 | 19 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 136 | 5.57 | 16.71 |
cct/agg | 122 | 69 | 38 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 234 | 5.69 | 17.07 |
att/aat | 10 | 10 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 23 | 5.74 | 17.22 |
aac/gtt | 7 | 4 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13 | 5.77 | 17.31 |
cgc/gcg | 61 | 39 | 22 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 126 | 5.77 | 17.31 |
ttg/caa | 12 | 11 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 25 | 5.6 | 16.8 |
agc/gct | 40 | 23 | 31 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 96 | 5.95 | 17.85 |
atg/cat | 24 | 10 | 10 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 45 | 5.73 | 17.19 |
tta/taa | 13 | 5 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 20 | 5.45 | 16.35 |
cac/gtg | 52 | 9 | 15 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 79 | 5.61 | 16.83 |
tgg/cca | 61 | 25 | 13 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 102 | 5.59 | 16.77 |
ata/tat | 8 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12 | 5.58 | 16.74 |
aca/tgt | 7 | 3 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13 | 5.77 | 17.31 |
cga/tcg | 13 | 7 | 3 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 25 | 5.76 | 17.28 |
cgt/acg | 7 | 4 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12 | 5.67 | 17.01 |
tag | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 15 |
gta/tac | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 6 | 18 |
agt | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 5 | 15 |
tetra- | 60 | 12 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 73 | 5.23 | 20.92 |
penta | 20 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 21 | 5.05 | 25.25 |
Hexa- | 8 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11 | 6 | 36 |
Total | 1625 | 774 | 464 | 433 | 323 | 280 | 137 | 418 | 282 | 237 | 193 | 149 | 87 | 65 | 324 | 5791 | 9.21 | 16.86 |