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Table 4 RNA-Seq results from roots confirmed by real-time PCR

From: Transcriptome analysis of nitrogen-starvation-responsive genes in rice

Locus ID

RNA-Seq log 2 (N-/N+)

RT-PCR log 2 (N-/N+)

Putative function

LOC_Os02g02190

3.51

1.55

Transporter, major facilitator family

LOC_Os02g53130

2.57

2.97

Nitrate reductase

LOC_Os06g10780

2.01

3.76

Ethylene-responsive transcription factor ERF014

LOC_Os06g01480

1.66

1.91

NAC domain-containing protein 7

LOC_Os01g50720

1.41

2.23

MYB-related protein Hv33

LOC_Os02g57490

1.41

2.07

LOB domain-containing protein 16

LOC_Os02g41580

1.14

1.97

Phosphoenolpyruvate carboxylase kinase

LOC_Os10g07510

1.08

0.67

LOB domain-containing protein 18

LOC_Os03g32230

1.05

1.76

Zinc finger protein 1

LOC_Os02g40710

1.04

2.12

Ammonium transporter protein

LOC_Os01g64790

−4.97

−2.78

Ethylene-responsive transcription factor ERF110

LOC_Os03g18130

−1.73

−2.02

Asparagine synthetase

LOC_Os08g10080

−1.53

−1.01

NAC domain-containing protein 21/22

LOC_Os11g08210

−1.06

−1.84

NAC domain-containing protein 71

  1. Expression ratios for RNA-Seq data were calculated with the DESeq program. All ratios are presented as Log2N-deficient/N-sufficient. Negative values indicate that expression was reduced under N-starvation.