Table 1 Significantly enriched pathways in cotton identified by KOBAS during leaf senescence (Corrected P-value ≤ 0.05)
From: Global analysis of the Gossypium hirsutum L. Transcriptome during leaf senescence by RNA-Seq
KEGG id | KEGG pathway name (down-regulated) | Gene number | Background number | P-value | Corrected p-value |
|---|---|---|---|---|---|
ko00196 | Photosynthesis - antenna proteins | 22 | 31 | 5.70E-11 | 7.88E-09 |
ko00195 | Photosynthesis | 24 | 86 | 9.92E-06 | 4.02E-04 |
ko00860 | Porphyrin and chlorophyll metabolism | 16 | 65 | 9.33E-04 | 1.88E-02 |
ko00710 | Carbon fixation in photosynthetic organisms | 22 | 115 | 2.14E-03 | 3.88E-02 |
KEGG id | KEGG pathway name (up-regulated) | Gene number | Background number | P-value | Corrected P-value |
ko04626 | Plant-pathogen interaction | 42 | 231 | 4.55E-13 | 1.86E-11 |
ko04075 | Plant hormone signal transduction | 34 | 338 | 2.78E-05 | 4.74E-04 |
ko00062 | Fatty acid elongation | 8 | 38 | 6.84E-04 | 9.57E-03 |
ko00480 | Glutathione metabolism | 13 | 99 | 1.03E-03 | 1.37E-02 |
ko00430 | Taurine and hypotaurine metabolism | 4 | 11 | 3.16E-03 | 3.62E-02 |