Lipopolysaccharide perception leads to dynamic alterations in the microtranscriptome of Arabidopsis thaliana cells and leaf tissues

Table 2 Expression profiling of miRNA differentially expressed in A. thaliana leaf tissues in response to LPS elicitation (L0 = untreated control, L3 = treated for 3 h)

miRNA	Mature sequence	Length	LO (count)	L3 (count)	L3/L0	Fold-change log ₂ L3/L0
miR158	TCCCAAATGTAGACAAAGCA	20	95	45	0.47	−1.1 ↓
miR160	TGCCTGGCTCCCTGTATGCCA	21	0	3		NA*
miR167	TGAAGCTGCCAGCATGATCTA	21	13	59	4.54	2.2 ↑
miR169	TAGCCAAGGATGACTTGCCT	20	0	9		NA*
miR173	TTCGCTTGCAGAGAGAAATCAC	22	1	0		NA*
miR393	ATCATGCGATCTCTTTGGAT	20	3	0		NA*
miR396	TTCCACAGCTTTCTTGAACT	20	314	140	0.45	−1.2 ↓
miR398	TGTGTTCTCAGGTCACCCCTG	21	2	6	3	1.6 ↑
miR408	ATGCACTGCCTCTTCCCTGGC	21	0	1		NA*
miR472	TTTTTCCTACTCCGCCCATACC	22	0	2		NA*
miR5014	TTTTCACTGTTTGATTCGTACACT	24	1	0		NA*
miR5635	GTATAAAACGATCATTTCAAGAGT	24	2	5	2.5	1.3 ↑
miR5642	TCGACACCTTGCGGCTAGGAAC	22	15	41	2.73	1.4 ↑
miR5651	GTTCGATCACCATTCGGAGCCT	22	1	0		NA*
miR5653	AACTCAACCCATGAACCCTAATGA	24	1	0		NA*
miR5662	ATTTTAGAGGTGACTAT	17	0	1		NA*
miR5998	TGTTTTGTTTTGTGATGTTGGAACAAAT	28	0	1		NA*
miR775	TTCGATGTCTAGCAGTGCCT	20	0	2		NA*
miR829	AGCTCTGATACCAAATGA	18	3	0		NA*
miR840	TTGTTTAGGTCCCTTAGTTTCT	22	0	1		NA*
miR850	AAGATCCGGACTACAACAAAGC	22	1	0		NA*

NA*: Relative change was not calculated as they contained 0 reads in one sample; Log₂ ratio of normalized miRNA expression in stress and control libraries.
L0: control, L3: treated condition; ↑ and ↓: up- and down regulated responses.

ISSN: 1471-2229