Table 3 The combined QTLs for fatty acid contents detected by WinQTLCart_2.5 and QTLNetwork_2.0
From: New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus
QTL | Chr. a | Marker interval | LOD | Additive | PV(%) | range | S b | Env. c | traits |
|---|---|---|---|---|---|---|---|---|---|
qA1-1 | A1 | znS13M26-100-CB10081 | 3.1 | −1.28 | 4.87 | 0.3-7.2 | W | 07D | C20:1 |
qA1-2 | A1 | CB10097-JICB0313 | 3.6 | 0.19 | 7.15 | 26.1-28.8 | W | 07Â W1 | C18:3 |
qA1-3 | A1 | HBr006-ZAAS156a | 7.6 | 0.29 | 14.64 | 35.9-37 | W | 07Â W1 | C18:3 |
qA1-4 | A1 | JICB0455-znS08M15-320 | 4.8 | 0.24 | 11.42 | 39.8-43.1 | W | 07Â W1 | C18:3 |
qA1-5 | A1 | em09me21-70-ZAAS165 | 4.0 | 0.07 | 3.43 | 80.4-84.6 | W&Q | 07Â W1 | C18:0 |
qA2-1 | A2 | CB10355-Ol10F04 | 3.1 | 0.23 | 6.64 | 0-18.2 | W&Q | 09Â W3 | C18:3 |
qA2-2 | A2 | HR-Sp1-210-pX154 | 3.3 | 0.31 | 7.85 | 56.2-61.5 | W | 09Â W2 | C18:3 |
qA2-3 | A2 | BRMS-082-HG-FT-A2 | 3.5 | 0.32 | 8.43 | 61.5-67.3 | W | 09Â W2 | C18:3 |
qA3-1 | A3 | ZNS13M26-360-HBR160 | Â | 0.05 | 2.02 | 15.7-21.4 | Q | Â | C16:0 |
qA3-2 | A3 | RA2E11-BRMS-303 | 3.8 | −0.03 | 4.02 | 35.9-37.7 | W | 07 W1 | C20:0 |
qA3-3 | A3 | CB10271-CNU250 | 3.3-4.0 | −0.52-0.02 | 3.01-5.66 | 37.8-43.0 | W&Q | 07D/07 W1 | C16:0/C18:2/C20:0/C22:0 |
qA3-4 | A3 | HBr124-KBrB043L02-12 | 3.1 | −0.10 | 3.22 | 61.5-63.7 | W | 07D | C16:0 |
qA3-5 | A3 | HBr137-CNU270 | 3.0-3.5 | −0.1-3.2 | 3.52-3.56 | 67.4-76.1 | W&Q | 07D/08 W2 | C16:0/C18:1 |
qA3-6 | A3 | HR-S2-130-HR-Tp4-165 | 3.8 | −0.03 | 4.78 | 79.0-86.5 | W | 07D | C22:0 |
qA4-1 | A4 | OL11H02C-SR12307I |  | −1.02 | 0.39 | 100.1-104.1 | Q |  | C22:1 |
qA4-2 | A4 | znS13M26-220-sN3514f | 4.4 | 0.18 | 8.86 | 14.0-23.2 | W | 08Â W2 | C16:0 |
qA4-3 | A4 | IGF3365B-SN13034 |  | −0.09 | 5.43 | 25.7-28.5 | Q |  | C16:0 |
qA4-4 | A4 | BRMS-276-HR-C001-A4 | 4.6 | 0.06-0.17 | 1.04-8.02 | 29.5-35.2 | W&Q | 08Â W2 | C16:0/C18:0 |
qA4-5 | A4 | niab048-JICB0134 | 3.4-5.4 | −0.03-0.18 | 5.45-6.26 | 45.6-60.5 | W | 07D/07 W1 | C16:0/C18:3/C20:0 |
qA4-6 | A4 | JICB0134-HBr091 | 5.22 | −0.05_-0.04 | 0.37-5.44 | 60.5-67.2 | W&Q | 07 W1 | C18:3/C20:0 |
qA4-7 | A4 | HBr202-HS-k02-2 | 3.2 | 0.24 | 6.98 | 70.4-82.3 | W | 07D | C18:3 |
qA5-1 | A5 | BRMS-034-niab017 | 3.3 | 0.03 | 4.18 | 22.9-29.3 | W | 07D | C22:0 |
qA5-2 | A5 | niab013-pX129a | 3.8 | 0.09 | 4.40 | 57.9-59.9 | W | 09D | FAS |
qA5-3 | A5 | CNU206-PIE1-6 | 3.2-3.7 | 0.09-0.26 | 4.38-8.17 | 65.3-79.0 | W&Q | 09Â W3/09D | C18:3/FAS |
qA5-4 | A5 | CNU268-HR-Tp4-200 | 3.1-3.3 | −2.3-0.22 | 1.88-5.96 | 82.3-89.7 | W | 07D | C18:1/C18:3 |
qA5-5 | A5 | IGF3134a-CNU362 | 3.8 | 0.23 | 6.76 | 95.5-109.3 | W | 07D | C18:3 |
qA6-1 | A6 | Ol11F12a-ZAAS92a | 4.8 | 0.29 | 10.56 | 0-4.6 | W&Q | 07D | C18:3 |
qA6-2 | A6 | HBr201-BRMS-030 | 3.2 | −0.07 | 3.05 | 40.7-51.1 | W&Q | 07D/07 W1 | C18:0 |
qA6-3 | A6 | HR-Tp3-320-pW217 | 4.1 | 0.25 | 7.51 | 9.1-14.2 | W | 07D | C18:3 |
qA7-1 | A7 | IGF1226l-CNU053b | 3 | −1.70 | 1.27 | 100.2-105.5 | W | 07D | C22:1 |
qA7-2 | A7 | HBr030-znS06M34-50 | 5.4 | −0.10 | 4.36 | 64.0-70.7 | W | 07 W1 | C16:0 |
qA7-3 | A7 | CNU167-CNU044 | 4.4 | −0.09 | 3.62 | 71.2-74.8 | W | 07 W1 | C16:0 |
qA7-4 | A7 | BRMS-036-HBr021 | 4.5 | −0.10 | 4.10 | 74.8-79.8 | W | 07 W1 | C16:0 |
qA8-1 | A8 | em10me26-120-JICB0335 |  | −0.04-0.64 | 4.39-6.42 | 18.6-26.8 | Q |  | C18:1/C20:0 |
qA8-2 | A8 | HBr107-HBr017 | 8.1 | 0.07 | 15.24 | 27.4-34.0 | W | 08Â W2 | C20:0 |
qA8-3 | A8 | HBr104-HBr010 | 4.7 | 0.05 | 9.30 | 36.8-41.9 | W | 08Â W2 | C20:0 |
qA8-4 | A8 | Na12B05a-HBr031 | 3.4 | −0.22 | 6.16 | 48.0-53.3 | W | 07D | C18:3 |
qA8-5 | A8 | IGF1108c-sR7178 | 3.1-59.9 | −10.4-9.14 | 5.7-47.55 | 57.4-74.6 | W&Q | 07D/07 W1/08 W2/09D/09 W2/09 W3 | C16:0/C18:0/C18:1/C18:2/C18:3/C20:0/C20:1/C22:0/C22:1/FAS |
qA8-6 | A8 | HBr015-HBr026 | 3.9-33.2 | −9.1-8.9 | 7.7-38.7 | 75.3-90.4 | W | 07D/07 W1/08 W2/09 W2 | C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS |
qA9-1 | A9 | pW123aH-HBr178 | 3.6 | 0.08 | 2.74 | 18.3-25.3 | W&Q | 07Â W1 | C16:0 |
qA9-2 | A9 | CNU296-KBrB073D09-12 | 3.2 | −3.20 | 4.64 | 45.5-52.0 | W | 09 W2 | C18:1 |
qA9-3 | A9 | HBr197-HBr205 | 4.5 | 0.04 | 5.59 | 63.5-66.9 | W | 07D | C20:1 |
qA9-4 | A9 | HBr205-niab003 | 4.3 | −1.50 | 6.47 | 66.9-70.0 | W&Q | 07 W1 | C20:1 |
qA9-5 | A9 | IGF1087g-niab127 | 3.3 | 0.52 | 3.32 | 70.9-71.5 | W | 07D | C18:2 |
qA9-6 | A9 | em18me23-380-HBr196 | 3.9 | 0.03 | 4.97 | 73.2-75.1 | W | 07D | C22:0 |
qA9-7 | A9 | pW203b-HBr053 | 3.4 | −0.08 | 3.96 | 86.1-95.5 | W | 09D | FAS |
qA10-1 | A10 | RA2E03-HS-b14-1 | 3.5 | 0.24 | 6.29 | 14.6-18.9 | W | 07D | C18:3 |
qA10-2 | A10 | HS-j90-HG4-HG-CO-A10 | 3.3-4.6 | −2.59-0.42 | 2.0-12.9 | 18.9-34.2 | W&Q | 07D/07 W1/09 W2 | C18:0/C18:1/C18:3 |
qA10-3 | A10 | JICB0551-JICB0573 |  | −0.05 | 0.28 | 60.8-71.3 | Q |  | C18:0 |
qC1-1 | C1 | EM18ME23-300-CB10258 | Â | 0.58 | 3.85 | 33.0-35.9 | Q | Â | C20:1 |
qC3-1 | C3 | IGF5376b-HBr014 | 3.4-15.1 | −8.20-8.63 | 5.0-30.0 | 118.4-126.1 | W | 07D/09D | C18:1/C22:0/C22:1 |
qC3-2 | C3 | HBr014-Ol13C12 | 4.7-38.6 | −9.83-8.86 | 6.3-37.7 | 126.1-131.5 | W | 07D/07 W1/08 W2/09D/09 W2/09 W3 | C16:0/C18:0/C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS |
qC3-3 | C3 | IGF0235b-BRMS-093 | 3.8-64.9 | −10.96-9.78 | 3.0-45.8 | 133.8-152.3 | W&Q | 07D/07 W1/08 W2/09D/09 W2/09 W3 | C16:0/C18:0/C18:1/C18:2/C20:0/C20:1/C22:0/C22:1/FAS |
qC3-4 | C3 | pX141bE-HBr032 | 4.9 | 0.10 | 4.80 | 15.7-26.0 | W&Q | 07D | C18:0 |
qC3-5 | C3 | pW221-pX141aE | 4.4 | 0.07 | 3.68 | 26.5-34.2 | W | 07D/07Â W1 | C18:0 |
qC3-6 | C3 | HBr211-HBr152 | 4.2 | 1.52 | 6.46 | 51.7-59.0 | W | 07Â W1 | C20:1 |
qC3-7 | C3 | Ol11G11b-pW143 |  | −0.05 | 4.98 | 80.3-91.5 | Q |  | C20:0 |
qC3-8 | C3 | HBr139-CNU099 | 4.7 | −3.10 | 2.91 | 94.1-98.8 | W | 07D | C18:1 |
qC5-3 | C5 | Ol10B02-JICB0509 | 3.2 | 0.10 | 5.01 | 30-62.6 | W | 09Â W3 | FAS |
qC5-1 | C5 | IGF3112a-em12me21-150 | 3.5-7.2 | −0.06-0.55 | 3.7-13.9 | 63.8-82.9 | W | 07D/08 W2 | C18:2/C20:0 |
qC5-2 | C5 | em12me21-150-IGF0193C | 4.2-4.6 | 0.28-0.56 | 3.9-9.8 | 82.9-88.3 | W | 07D/09Â W3 | C18:2/C18:3 |
qC6-1 | C6 | HBr025-Na12E01a | 5.5 | 0.24 | 11.4 | 74.3-80.8 | W | 09Â W2 | FAS |
qC6-2 | C6 | HBr057-HBr047 | 4.0 | −0.21 | 8.64 | 91.0-95.4 | W | 09 W2 | FAS |
qC6-3 | C6 | SR12387-EM14ME28-200 |  | −0.57 | 0.10 | 41.2-45.3 | Q |  | C22:1 |
qC7-1 | C7 | SNRH63-CNU400 |  | −0.13 | 1.68 | 18.8-37.2 | Q |  | C18:3 |
qC8-1 | C8 | CB10504-sN11670a | 3.4 | 0.36-0.54 | 3.0-3.65 | 32.4-46.8 | W&Q | 07D/09Â W3 | C18:2/C20:1 |
qC9-1 | C9 | CB10064-em20me27-230 | 6.1 | −0.12 | 6.28 | 26.3-42.9 | W | 07 W1 | C16:0 |
qC9-2 | C9 | EM20ME27-230-HR-TP3-360 | Â | 0.13 | 3.83 | 46.2-50.3 | Q | Â | C18:3 |
qC9-3 | C9 | BRMS-154-HBr144 | 5 | −0.12 | 5.31 | 52.7-61.2 | W&Q | 07D/07 W1 | C16:0 |
qC9-4 | C9 | HBr186-SA30 | 3.1-4.1 | −0.14-0.08 | 3.97-5.4 | 62.5-74.2 | W | 07D/08 W2 | C16:0/C18:0 |
qC9-5 | C9 | S16071-3F3R-sNRG42 | 3.4 | 0.07-0.90 | 0.03-3.3 | 76.2-82.8 | W&Q | 07D | C18:0/C22:1 |
qC9-6 | C9 | HR-Sp1-170-sR12384I | 3.6 | 2.71 | 3.36 | 92.7-98.4 | W | 09Â W3 | C18:1 |