Table 1 Statistics of raw and mapped read pairs from RNA-seq analysis of SC unpollination/self-pollination (SCUP/SCP) and SI unpollination/self-pollination (SIUP/SIP) styles
Sample ID | Raw read pairs | High-quality read pairs | High-quality Percent | Mapped read pairs | Mapped Percent | Unmapped read pairs | Multi-mapped read pairs | Multi-mapped Percent |
|---|---|---|---|---|---|---|---|---|
SCP1 | 17000933 | 15215933 | 89.50% | 13817410 | 90.80% | 1398523 | 65920 | 0.50% |
SCP2 | 16374027 | 14680679 | 89.66% | 13485391 | 91.90% | 1195288 | 59339 | 0.50% |
SCP3 | 17667649 | 15893802 | 89.96% | 14489321 | 91.20% | 1404481 | 67431 | 0.50% |
SCUP1 | 18248702 | 16320337 | 89.43% | 14747316 | 90.40% | 1573021 | 48233 | 0.30% |
SCUP2 | 17346914 | 15557760 | 89.69% | 14145517 | 90.90% | 1412243 | 59543 | 0.40% |
SCUP3 | 18986356 | 17021427 | 89.65% | 15362024 | 90.30% | 1659403 | 56730 | 0.40% |
SIP1 | 15510971 | 13879490 | 89.48% | 9431478 | 68.00% | 4448012 | 32428 | 0.30% |
SIP2 | 16845976 | 15163409 | 90.01% | 10608995 | 70.00% | 4554414 | 37544 | 0.40% |
SIP3 | 16920459 | 15154474 | 89.56% | 10396040 | 68.60% | 4758434 | 43009 | 0.40% |
SIUP1 | 17664280 | 15847493 | 89.71% | 10885898 | 68.70% | 4961595 | 29071 | 0.30% |
SIUP2 | 17752773 | 15880716 | 89.45% | 11004025 | 69.30% | 4876691 | 31678 | 0.30% |
SIUP3 | 18253204 | 16435260 | 90.04% | 11232677 | 68.30% | 5202583 | 31212 | 0.30% |