Skip to main content
Fig. 1 | BMC Plant Biology

Fig. 1

From: Genome-wide analysis of the gene families of resistance gene analogues in cotton and their response to Verticillium wilt

Fig. 1

Similarity analysis of RGA genes in the G. raimondii genome. (A) The identity matrix of all RGA genes versus all RGA genes. The RGA genes were arranged in a series from Chr01 to Chr13. “UN” represents the RGA genes that cannot presently be mapped to chromosomes. The identity level between each two genes was determined by BLASTN (Version 2.2.23). (B) The identity matrix of all RGAs encoding proteins versus all RGAs encoding proteins. The identity level between each two proteins was determined using the BLASTP program (Version 2.2.23). (C) Homology analysis between two chimeric sequences of RGA genes. The chimeric sequence was constructed by ligating the RGA sequences in a series from Chr01 to Chr13. The similarity blocks were determined using the BLASTN program (Version 2.2.23) with chimeric sequences, ignoring self-matches and filtering out the similarity blocks based on the length of the smallest RGA gene (216 bp)

Back to article page