A comparison of the low temperature transcriptomes of two tomato genotypes that differ in freezing tolerance: Solanum lycopersicum and Solanum habrochaites

Table 4 Altered alternative splicing events between S. lycopersicum and S. habrochaites

Type	Total AS Number	Tsh0	Tsh1	Tsh12	C1	C12	C12	Tsh1	Tsh12	Tsh12
		Vs	Vs	Vs	Vs	Vs	Vs	Vs	Vs	Vs
		C0	C1	C12	C0	C0	C1	Tsh0	Tsh0	Tsh1
Increased under cold stress
3pMXE	396	18	22	20	2	12	13	9	15	12
5pMXE	506	33	33	38	3	15	11	13	23	16
A3SS	2953	88	75	95	35	88	80	33	91	77
A3SSandES	102	2	1	3	0	2	1	1	6	7
A5SS	2230	53	35	64	18	66	59	23	70	54
A5SSandES	94	1	2	5	2	4	5	1	4	5
CassetteExon	317	16	11	8	12	14	11	4	12	13
ES	2091	27	35	206	34	300	291	19	358	324
MXE	57	5	2	3	5	5	4	1	3	3
IntronR	8211	27	25	32	20	69	86	10	24	32
Total	16957	270	241	474	131	575	561	114	606	543
Decreased under cold stress
3pMXE	396	7	10	13	7	2	4	6	6	8
5pMXE	506	6	11	18	3	3	6	13	17	12
A3SS	2953	68	60	72	32	49	35	41	41	34
A3SSandES	102	2	0	1	0	1	0	0	1	1
A5SS	2230	39	54	54	15	42	27	14	22	24
A5SSandES	94	2	3	5	1	1	1	2	0	1
CassetteExon	317	19	21	15	18	18	19	18	20	11
ES	2091	31	48	182	19	17	17	17	14	13
MXE	57	10	5	5	5	8	6	2	1	1
IntronR	8211	20	25	47	19	11	22	9	8	6
Total	16957	204	237	412	119	152	137	122	130	111

C0, C1 and C12 represent S. lycopersicum cold treatment for 0 h, 1 h and 12 h, respectively; Tsh0, Tsh1 and Tsh12 indicate S. habrochaites cold treatment for 0 h, 1 h and 12 h, respectively

ISSN: 1471-2229