From: Comprehensive analysis of Panax ginseng root transcriptomes
Sample | Raw | After filtering | ||
---|---|---|---|---|
No. of reads | Length (bp) | No. of reads | Length (bp) | |
One-year-old roots | Â | Â | Â | Â |
Whole roots, replicate 1 | 33,390,674 | 3,372,458,074 | 32,177,717 | 3,517,631,636 |
Whole roots, replicate 2 | 14,967,974 | 2,087,854,507 | 13,474,584 | 1,873,238,319 |
Whole roots, replicate 3 | 15,363,222 | 2,152,050,739 | 13,768,020 | 1,922,229,967 |
Six-year-old roots | Â | Â | Â | Â |
Main body, replicate 1 | 33,991,964 | 3,433,188,364 | 32,893,508 | 3,247,044,556 |
Main body, replicate 2 | 12,654,102 | 1,760,838,610 | 11,308,086 | 1,567,923,239 |
Main body, replicate 3 | 16,326,086 | 2,265,681,167 | 14,617,400 | 2,020,797,690 |
Lateral roots, replicate 1 | 33,938,598 | 3,427,798,398 | 32,883,593 | 3,248,608,642 |
Lateral roots, replicate 2 | 18,047,934 | 2,513,373,878 | 16,017,038 | 2,221,382,191 |
Lateral roots, replicate 3 | 16,166,344 | 2,261,990,497 | 14,277,362 | 2,261,990,497 |
Rhizomes, replicate 1 | 34,968,250 | 3,531,793,250 | 33,898,134 | 3,350,538,852 |
Rhizomes, replicate 2 | 17,900,886 | 2,505,960,830 | 15,937,196 | 2,222,852,715 |
Rhizomes, replicate 3 | 14,435,664 | 2,012,659,529 | 12,940,042 | 1,797,688,838 |
In vitro cultured roots | Â | Â | Â | Â |
Adventitious roots [17] | 90,242,024 | 9,114,444,424 | 85,335,736 | 8,441,707,472 |
Total | 352,393,722 | 40,440,092,267 | 329,528,416 | 37,693,634,614 |