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Table 1 Overall features of LTR-RTEs identified in E. grandis genome

From: Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic

Superfamilies

Families

Lineages

LTR length (bp)

LTRs Ida

LTR-RTE size (bp)

Copy number

Copia

RLC_egAle_1

Ale

458/457

99 %

5509

12

RLC_egAle_2

Ale

434/434

96 %

5395

4

RLC_egMax_1

Maximus

904/903

98 %

9670

623

RLC_egBianca_1

Bianca

424/423

99 %

5008

77

RLC_egAngela_1

Angela

162/161

93 %

11280

1

RLC_egAngela_2

Angela

392/392

92 %

7473

67

RLC_egIvana_1

Ivana

247/239

93 %

4440

49

Gypsy

RLG_egTat_1

Tat

2199/2257

93 %

18300

15

RLG_egTekay_1

Tekay

555/552

96 %

12159

7

  1. aId: identity among 5’ and 3’LTRs