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Table 1 List of genes in the chloroplast genome of pineapple

From: Complete chloroplast genome sequence of MD-2 pineapple and its comparative analysis among nine other plants from the subclass Commelinidae

 

Groups of genes

Name of genes

Protein synthesis and DNA-replication

Transfer RNAs

trnC-GCA, trnD-GUC, trnE-UUC, trnF-GAA, trnfM-CAU, trnG-GCC, trnG-UCC, trnK-UUU, trnL-UAA, trnL-UAG, trnM-CAU, trnP-UGG, trnQ-UUG, trnR-UCU, trnS-GCU, trnS-GGA, trnS-UGA, trnT-GGU, trnT-UGU, trnV-UAC, trnW-CCA, trnY-GUA, trnA-UGC (2×), trnH-GUG (2×), trnI-CAU (2×), trnI-GAU (2×), trnL-CAA (2×), trnN-GUU (2×), trnR-ACG (2×), trnV-GAC (2×)

 

Ribosomal RNAs

rrn16 (2×), rrn23 (2×), rrn4.5 (2×), rrn5 (2×)

 

Ribosomal protein small subunit

rps16, rps2, rps14, rps4, rps18, rps12 (2×), rps11, rps8, rps3, rps19 (2×), rps7 (2×), rps15

 

Ribosomal protein large subunit

rpl14, rpl16, rpl2 (2×), rpl20, rpl22, rpl23 (2×), rpl32, rpl33, rpl36

 

Subunits of RNA polymerase

rpoA, rpoB, rpoC1, rpoC2

Photosynthesis

Photosystem I

psaA, psaB, psaC, psaI, psaJ

 

Photosystem II

psbA, psbB, psbC, psbD, psbE, psbF, psbH, psbI, psbJ, psbK, psbL, psbM, psbN, psbT, lhbA

 

Cythochrome b/f complex

petA, petB, petD, petG, petL, petN

 

ATP synthase

atpA, atpB, atpE, atpF, atpH, atpI

 

NADH-dehydrogenase

ndhA, ndhB (2×), ndhC, ndhD, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK

 

Large subunit Rubisco

rbcL

Miscellaneous group

Translation initiation factor IF-1

infA

 

Acetyl-CoA carboxylase

accD

 

Cytochrome c biogenesis

ccsA

 

Maturase

matK

 

ATP-dependent protease

clpP

 

Inner membrane protein

cemA

Pseudogene unknown function

Conserved hypothetical chloroplast ORF

ycf1 (2×), ycf15 (2×), ycf2 (2×), ycf3, ycf4, ycf68 (2×), orf42 (2×), orf56 (2×)