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Table 2 Names, NCBI and CRIBI accession numbers and EST and splice variant numbers of the cytokinin-related grapevine sequences identified in this study

From: Changes in transcription of cytokinin metabolism and signalling genes in grape (Vitis vinifera L.) berries are associated with the ripening-related increase in isopentenyladenine

Name

NCBI Reference Sequence

NCBI ESTs

Fernandes et al. [109]a

CRIBI (V2) Locus ID

Splice variants

Amplified variants

VviIPT2

XM_002263711

8

 

VIT_206s0061g01410

1,2

1,2

VviIPT9

XM_002282976

3

 

VIT_219s0014g01630

1,2

1

VviIPT10

XM_002279335

0

 

VIT_201s0011g03640

1

1

VviIPT11

XM_002268812

0

 

VIT_209s0070g00710

1

1

VviIPT12

XM_002271926

2

 

VIT_207s0104g00270

1

1

VviIPT13

XM_003632592

0

 

VIT_208s0040g01010

1

1

VviIPT14

XM_002277555

4

 

VIT_205s0020g02630

1

1

VviIPT15

XM_002278900

5

 

VIT_208s0040g00100

1–5

1–5

VviLOG5a

XM_010665788

6

 

VIT_218s0001g00210

1

1

VviLOG5b

XM_002281803

4

 

VIT_203s0038g03420

1–3

1–3

VviLOG10

XM_002276739

38

 

VIT_218s0001g14030

1–6

1–6

VviLOG11

XM_002275378

0

 

VIT_208s0007g02480

1

1

VviLOG12

XM_002276243

1

 

VIT_208s0040g01780

1

1

VviLOG13

XM_002285210

15

 

VIT_206s0004g02680

1–7

1–7

VviLOG14

XM_002285680

2

 

VIT_206s0004g00590

1–4

1–4

VviLOG15

XM_002274711

0

 

VIT_213s0064g00740

1–8

1,3,5–8

VviLOG16

XM_002277816

0

 

VIT_208s0007g08340

1

1

VviLOG17

XM_002278269

5

 

VIT_204s0008g01040

1

1

VviCKX5

XM_002280761

21

 

VIT_218s0001g13200

1,2

1,2

VviCKX6a

XM_002270805

1

 

VIT_213s0158g00320

1–3

1–3

VviCKX6b

XM_002284524

1

 

VIT_200s0252g00040

1

1

VviCKX7

XM_002279924

15

 

VIT_204s0008g01880

1–3

1–3

VviCKX8

XM_002279483

0

 

VIT_211s0016g02110

1

1

VviCKX9

XM_003632356

0

 

VIT_207s0005g06025

1

1

VviCKX10

XM_002263610

1

 

VIT_207s0005g05960

1

1

VviCKX11

XM_002264409

0

 

VIT_207s0005g06010

1

1

VviCHK1

XM_002265212

2

 

VIT_204s0023g03680

1,2

na

VviCHK2

XM_002269941

2

VvCyt1

VIT_212s0057g00690

1–6

1–5

VviCHK3

XM_002276925

24

VvCyt2

VIT_201s0010g03780

1–4

1–4

VviCHK4

XM_002285081

10

VvCyt3

VIT_201s0011g06190

1–6

1–5

VviCHK5

XM_002271707

2

 

VIT_204s0069g00750

1–4

na

VviCKI

XM_002270283

0

 

VIT_207s0005g01380

1

na

VviRR11a

XM_002274637

2

VvRRb1

VIT_217s0000g10100

1,2

1,2

VviRR11b

XM_002267580

1

VvRRb5

VIT_201s0010g02230

1

1

VviRR25

XM_002269335

0

VvRRb2

VIT_207s0005g01010

1

1

VviRR26

XM_002270082

0

VvRRb4

VIT_211s0052g01160

1

1

VviRR27

XM_002275106

13

VvRRb6

VIT_205s0077g01480

1–4

1–4

VviRR28

XM_002281255

20

 

VIT_201s0011g05830

1

1

VviRR29

XM_002270797

4

VvRRb3

VIT_211s0206g00060

1,2

1,2

VviRR30

XM_002282892

8

 

VIT_204s0008g05900

1–4

2,4

VviRR31

FJ822980 (partial cds)

0

 

VIT_201s0026g00940

1

1

VviRR32

XM_002283751

9

VvRRa1

VIT_217s0000g07580

1

1

VviRR33

XM_002280710

3

VvRRa3

VIT_213s0067g03070

1

1

VviRR34

XM_002284468

1

 

VIT_218s0001g02540

1–4

1

VviRR35

XM_002273954

7

VvRRa2

VIT_208s0007g05390

1

1

VviRR36

XM_002266214

0

 

VIT_213s0067g03460

1

1

VviRR37

XM_002268316

4

VvRRa4

VIT_213s0067g03510

1

1

VviRR38

XM_002267339

0

 

VIT_213s0067g03450

1

1

VviRR39

XM_002267896

2

 

VIT_213s0067g03490

1

1

VviRR40

XM_003634849

0

 

VIT_213s0067g03480

1

1

VviRR41

XM_002267368

8

 

VIT_213s0067g03430

1

1

  1. Phylogenetic trees for each family, using grapevine and Arabidopsis nucleotide sequences, are shown in Additional files 3 and 4. Additional file 1 contains the TAIR accession numbers of the Arabidopsis sequences used for the analyses. na, not applicable
  2. anames previously used by Fernandes et al. [109]