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Table 3 VvNAC26 haplotypes (H1-H26)

From: Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine

H

Haplotype

Global population

k1

k2

k3

H1

TTTCAT010AC1GCT1TT1TGTTGACAAAAACC1CACCTG0CAG0CCTCAGGAAG0TAAGGCGGTG1TG

1 (0.4 %)

-

-

-

H2

TTTCAT110AC1GCT1TT1TGTTGACAAAAACC1CACCTG0CAG0CCTCAGGAAG0TAAGGCGGTG1TG

5 (2.2 %)

-

-

4 (8.0 %)

H3

TTTCAT110AC1GCT1TT1TGTTGAAAAAAACC1CACCTA1TAG0CCTCAGGAAA1TATGACGGTG0TA

13 (5.7 %)

-

-

8 (16.0 %)

H4

TTTAGT110TT1GCC0TT1TGTTCACAAGGACC1CACCTG1CAG0CTTCAGGAAG1TAAGGCGGTG0TG

8 (3.5 %)

1 (1.4 %)

-

3 (6.0 %)

H5

TTTAAT010AC1GCT1TT1TGTTGACAAAAACC1CACCTG1CAC0GCTCAGGGAG1TAAGGCGGTG0TG

1 (0.4 %)

-

-

1 (2.0 %)

H6

TTTAAG010TT1GCC0TT1AGTTCACAAAAACC1CACCTG1CAG0CCGTAGGAAA1CATGACGGTG0TG

3 (1.3 %)

3 (4.3 %)

-

-

H7

TTTAAG010AC1GCT1TT1TGTTGACAAAAACC1CACCTG1CAC0CCTCAGGAAA1TATGACGGTG0TG

2 (0.9 %)

-

-

2 (4.0 %)

H8

TTTAAG010AC1GCT1TT1TGTTGACAAAAACC1CACCTG1CAC0GCTCAGGGAG1TAAGGCGGTG0TG

4 (1.8 %)

-

1 (5.0 %)

2 (4.0 %)

H9

TTCAAG010TT1GCC0TT1AGTTCACAAAAACC1CACCTG1CAC0CCTCAGGAAA1TATGACGGTG0TG

10 (4.4 %)

4 (5.7 %)

-

1 (2.0 %)

H10

TTCAAG010TT1GCC0TT1AGTTCACAAAAACC1GACCTG1CAC0CCTCAGGAAA1TATGACGGTG0TG

1 (0.4 %)

-

-

-

H11

TTCAAG010TT1GCC0TT1AGTTCACAAAAATC1CACCTG1CAC0CCTCAGGAAA1TATGACGGTG0TG

1 (0.4 %)

-

-

-

H12

TTCAAG010AT1GCT1TT1TGTTCACAAAAACC1CACCTG1CAC0CCTCAGGAAA1TAAGGCGGTG0TG

1 (0.4 %)

-

-

-

H13

TTCAAG010AC1GCT1TT0TGTTGAAAAAAACC1CACCTG1TAG0GCTCAGCGAG1TAAGGCGGTG0TG

2 (0.9 %)

-

-

2 (4.0 %)

H14

TTCAAG011AT1GCC1TT0TCTACACAAAAACT1CGTCTG1CCG0GCTCAGGAAA1TAAGATGACG0TG

1 (0.4 %)

-

-

-

H15

TTCAAG000AC1GCT1TA1TGTTCACAAAAACC1CACCTG1CAC0CCTCAGGAAA1TAAGGCAGTG0CG

3 (1.3 %)

1 (1.4 %)

-

-

H16

TCCAAT010AT0GTT1AT1TCTTCGCCAAAGCT1GACCTG1CAC0CCTCTCGAAA1TATGACGGTA0TG

2 (0.9 %)

-

-

1 (2.0 %)

H17

ATCAAT010AT1GCT1TT1TGATCACAGAAATT1GACCTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

86 (37.7 %)

31 (44.3 %)

4 (20.0 %)

16 (32.0 %)

H18

ATCAAT010AT1GCT1TT1TGATCACAGAAATT1GACTTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

1 (0.4 %)

1 (1.4 %)

-

-

H19

ATCAAT010AT1GCT1TT1TGATCACAGAAATT0GACTTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

14 (6.1 %)

6 (8.6 %)

1 (5.0 %)

-

H20

ATCAAT010AT1GCT1TT0TGATCACAGAAATT1GACTTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

53 (23.2 %)

19 (27.1 %)

14 (70.0 %)

7 (14.0 %)

H21

ATCAAT010AT1GCT0TT0TGATCACAGAAATT1GACTTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

2 (0.9 %)

-

-

-

H22

ATCAAT010AT1TCT1TT1TGATCACAGAAATT1GACCTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

4 (1.8 %)

1 (1.4 %)

-

1 (2.0 %)

H23

ATCAAT010AT1TCT1TT1TGATCACAGAAATT1GACCTG1CAC0CCTCAGGAGG1TGAAGCGGTG0TG

1 (0.4 %)

-

-

1 (2.0 %)

H24

ATCAAT010AT1TCT1TT1TGATCACAGAAATT1GACCCG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

6 (2.6 %)

3 (4.3 %)

-

-

H25

ATCAAT010AT1TCT1TT1TGATCACAGAAATT1GACCCG1CAC1CCTCAGGAGG1TAAAGCGGTG0TG

2 (0.9 %)

-

-

-

H26

ATCAAT110AT1GCT1TT1TGATCACAGAAATT1GACCTG1CAC0CCTCAGGAGG1TAAAGCGGTG0TG

1 (0.4 %)

-

-

1 (2.0 %)

  1. Their absolute (n) and relative (%) frequencies are given for the global population (n = 114) and the genetic groups established by STRUCTURE [k1 (n = 35), k2 (n = 10), and k3 (n = 25)]. INDELs are coded as 1/0 for insertion/deletion events, respectively
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BMC Plant Biology

ISSN: 1471-2229

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