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Table 2 List of SNPs significantly associated with APR to the Ug99 race group in Kenya and Ethiopia. ‘Chromosome 0’ includes all unmapped SNP markers

From: Association mapping of North American spring wheat breeding germplasm reveals loci conferring resistance to Ug99 and other African stem rust races

SNPa Chrb Pos (cM) P value R2 (%)c KenOff13d KenMain13e EthOff13f EthOff14g
IWB1351 0 0.0 9.18E-04 1.4 - - - +
IWB11987 0 0.0 2.71E-04 4.0 - - - -
IWB13304 0 0.0 9.18E-04 1.4 - - - +
IWB20617 0 0.0 8.92E-04 0.5 - - - -
IWB40153 0 0.0 9.18E-04 1.4 - - - +
IWB65634 0 0.0 2.18E-04 3.9 - - - -
IWA3120 1B 90.3 9.07E-04 0.6 - - - -
IWB21176 1B 90.3 9.64E-04 0.6 - - + -
IWB31027 1B 90.3 9.64E-04 0.6 - - + -
IWB56771 1B 90.3 9.34E-04 0.6 - - + -
IWB59663 1B 90.3 9.64E-04 0.6 - - + -
IWB49915 2A 122.5 9.18E-04 1.4 - - - +
IWB49914 2A 123.6 9.18E-04 1.4 - - - +
IWB22672 2A 159.7 9.98E-04 0.6 - - + -
IWB2369 2B 48.5 7.68E-04 0.4 - - - -
IWA4275 2B 105.9 8.75E-04 1.4 - - - -
IWA8534 2B 126.1 1.80E-04 0.3 - + - -
IWB23660 2B 126.3 1.79E-04 0.3 - + - -
IWB25868 2B 126.3 3.11E-04 0.7 - + - -
IWB69631 2B 126.3 3.11E-04 0.7 - + - -
IWB25869 2B 126.5 3.11E-04 0.7 - + - -
IWB32143 2B 157.2 5.05E-04 4.6 - - - -
IWB8481 2D 9.2 8.44E-04 0.5 - - - -
IWA5203 3B 11.5 7.97E-04 0.4 - - - -
IWB30730 3B 11.5 7.74E-04 1.3 - - - -
IWB12193 3B 11.6 3.24E-04 4.2 - + - -
IWB49924 3B 11.6 5.65E-04 0.2 - - - -
IWB65737 3B 11.6 9.15E-04 0.6 - - - -
IWB60424 3B 13.8 5.02E-04 0.1 - - - -
IWB36021 3B 14.1 8.31E-04 1.3 - - - -
IWA2493 3B 32.2 1.49E-04 0.2 - - + -
IWB40004 4A 30.9 9.12E-04 0.6 - + - -
IWB52694 4A 43.4 9.96E-05 3.2 - + - -
IWB46973 4A 47.0 8.26E-04 1.3 - + - -
IWB56556 4A 47.0 7.54E-04 1.3 - - - -
IWB67877 4A 47.0 8.34E-04 1.3 - - - -
IWB47184 5A 69.6 3.44E-04 0.3 - - + -
IWA233 6A 66.0 8.48E-04 1.3 - + - -
IWB24757 6B 119.7 6.33E-04 1.1 - - - -
IWB35697 6B 119.7 1.77E-05 1.3 - - + +
IWB6474 6B 119.7 6.33E-04 1.1 - - - -
IWB45581 6B 120.6 3.00E-04 0.6 - - - -
IWB5070 7A 211.0 2.19E-04 3.9 - - - -
IWB1874 7A 212.7 3.18E-04 0.3 - - - -
IWB4830 7A 212.7 4.50E-04 4.5 - - + -
IWB62560 7A 213.2 2.30E-04 0.6 - - - -
IWB47548 7B 153.4 6.50E-04 0.3 - - - -
IWA4175 7B 177.1 9.52E-04 0.6 - - - -
  1. a Underlined SNP markers were detected during the ‘combined’ mapping approach but not during the ‘APR-specific’ mapping approach. SNP markers in bold were detected in both mapping approaches
  2. b Chr ‘0’ indicates unmapped SNPs that were significant in the analysis
  3. c R2 Indicates percent of phenotypic variation explained by the significant locus
  4. d–g The ‘+’ sign indicates that the SNP was also detected in GWAS results in each of the environments. The ‘-’ sign indicates that the SNP was detected only in combined analysis of all environments, and not in individual environments